Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1929 ATGTGCGGTGTTTCCAAGGGGAAACCTTCTCAAATTGATTTGATCATGGAGGAGAAGTATGCAAAAGAAGGGATGCATCATAAGATTTCTGCTTTGCTTGAGTTTTCAGCGACGGATGATCTAATTGGTTTCAAAGATGCTGTGGAAAAGGAGGGTCATGATGTTGATGGGGTGGGGTTTTGGTATGGAAGGCGTGTTGGCTCGAAGAAAATAGGTTATGAAGAGAGGACACCTCTCATGGTTGCTTCCATGTTTGGAAGCCTTGATGTATCAACTTATATTCTTGGAATGGGTTGTATCGATGTTAATCGGGCTAGTAGGTCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGCCGCTTCCGTTGAGGTTGTCAAGCTTTTGCTTGATGCATCTGCTGATGTTAGTGCTGTTGACGCCAATGGTAACCGGTCAATTGACTTGATTGTCTCTGTGGCTAATTCTATCTTCAATCAAAGGTCAAGTGTGCTACAGGCTCTCCTGGAGGGTACAAGTGATGCTGATCAGGCATGTCTCTCACTTCCGGAAGTGATTGACCAACTTGAGGAACAAAGGCAAGATATGACCACACCCCGTGTTTCAAAAGACTATCCTATTGATCTCTCCCTTCCAGACATAAAGAATGGGATATATGGTACTGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCTCATGATTGGACAGAGTGCCCCTTTGTTCATCCAGGGGAAAATGCAAGGCGGCGTGATCCAAGGAAGTATCATTACAGCTGTGTCCCTTGTCCTGAGTTTAGGAAGGGATCTTGCAGCAAGGGCGATGCCTGTGAGTATGCACATGGCATTTTTGAGTGCTGGCTTCACCCTGCCCAGTACCGGACTCGGCTTTGCAAGGATGAGGGTGGATGCACAAGGAGGGTATGCTTCTTTGCTCACAAGCTTGAGGAGCTTCGCCCCTTGTATGCTTCTACTGGTTCTGCTATTCCTTCCCCGAGGTCCTATTCAGCTAGTGCTTCTGCATTGGAGATGGGTTCAGTTAACCCAATTGCACTTGGTTCTCCATCTGTCTTGATGCCACCTACCTCAACACCACCTTTGACTCCATCTGGAGCATCTTCTCCCATTGCTGGATCCATGTGGTCTCAATCTAATGTTTCGGTCCCTACCTTGCAGCTGCCCAAAAGCAGATTGAAGACTGCATCTACTGTAAGAGATACTGATTTAGATATGGAACTGCTTGGACTTGAAACACATTGGCGTAGACAACAGCTAATGATGGATGAGATATCTGCTCTTTCCTCTCCCAACTGGAAAAATTCCATGCCTAATAGTCCATCTTTTCGTGTTCCTTTGAATGATCACACTGGGGAGTTAAATAGGCTTTCAGGGGTGAAGCCTGCTAACCTTGAAGATATGTTTGGATCGCTCGATCCATCAATTTTGTCTAAATACCATGGAATCTCACTTGATGTTGCAGGACCTCAGTTACAGTCTCCAACCGGAATCCAGATGCGCCAGAATGTGAACCAGCAGCTAGGAGGCTATTCATCCAGCCTTTCCACTTTGAATGTGATTGGATCGCGGTCCTTCAGGCTTGATCAGTCTGGCGAAGCAGCCTCGGTGGCCTTGAATCCAAGAGTTGCTGCCTTTGCAAAGCGGAGCCAGAGCTTCATTGAGCGCGGCGTGGTGAACCATCATTCTGAACTTCCTTCTCCAAAGCCCTCTACCTTCTCTAACTGGGGCTCACCTGTTGGAAAATTAGATTGGGCCGTAAATGGAGAAGAGCTGAATAAGCTGAGGAAATCTGCTTCCTTTGGATTTCGAGGCAGCGACACTCCTCTAACAAAGACTTCAACCAAAATGTCAGCAAATGTTGATGATGAGCCAGATGTGTCTTGGGTTAACTCACTTGTGAAGGATGCTCCACCGGAATCCGGTGAATCTGGTGAATACAGTGTGGAAGATCAGCGAAAGCTACTGCAATGCCACAATGGAACAGATGCGATTCCAGCATGGTTGGAGCAATTGTACTTGGACCAGGAGCAAATGGTGGCATGA 2088 0.4689 MCGVSKGKPSQIDLIMEEKYAKEGMHHKISALLEFSATDDLIGFKDAVEKEGHDVDGVGFWYGRRVGSKKIGYEERTPLMVASMFGSLDVSTYILGMGCIDVNRASRSDGATALHCAVAGGSAASVEVVKLLLDASADVSAVDANGNRSIDLIVSVANSIFNQRSSVLQALLEGTSDADQACLSLPEVIDQLEEQRQDMTTPRVSKDYPIDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDEGGCTRRVCFFAHKLEELRPLYASTGSAIPSPRSYSASASALEMGSVNPIALGSPSVLMPPTSTPPLTPSGASSPIAGSMWSQSNVSVPTLQLPKSRLKTASTVRDTDLDMELLGLETHWRRQQLMMDEISALSSPNWKNSMPNSPSFRVPLNDHTGELNRLSGVKPANLEDMFGSLDPSILSKYHGISLDVAGPQLQSPTGIQMRQNVNQQLGGYSSSLSTLNVIGSRSFRLDQSGEAASVALNPRVAAFAKRSQSFIERGVVNHHSELPSPKPSTFSNWGSPVGKLDWAVNGEELNKLRKSASFGFRGSDTPLTKTSTKMSANVDDEPDVSWVNSLVKDAPPESGESGEYSVEDQRKLLQCHNGTDAIPAWLEQLYLDQEQMVA* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1929 695 Gene3D - 65 222 IPR036770 -
Gso2g1929 695 ProSiteProfiles Zinc finger C3H1-type profile. 271 293 IPR000571 GO:0046872
Gso2g1929 695 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 291 IPR000571 GO:0046872
Gso2g1929 695 Pfam Ankyrin repeats (3 copies) 69 142 IPR002110 GO:0005515
Gso2g1929 695 SMART c3hfinal6 266 292 IPR000571 GO:0046872
Gso2g1929 695 SMART c3hfinal6 301 324 IPR000571 GO:0046872
Gso2g1929 695 ProSiteProfiles Ankyrin repeat profile. 109 144 IPR002110 GO:0005515
Gso2g1929 695 PANTHER UNKEMPT FAMILY MEMBER 19 694 IPR045234 -
Gso2g1929 695 SMART ANK_2a 109 141 IPR002110 GO:0005515
Gso2g1929 695 SMART ANK_2a 74 104 IPR002110 GO:0005515
Gso2g1929 695 Gene3D - 266 329 - -
Gso2g1929 695 ProSiteProfiles Ankyrin repeat region circular profile. 109 143 - -
Gso2g1929 695 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 19 694 - -
Gso2g1929 695 SUPERFAMILY Ankyrin repeat 71 173 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1929 Gso-Chr2 43564144 43567321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1929 27 690 C2H2 Transcription Factor Family AT5G12850 38.873 3.66e-143 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso2g1929 Ank_2 7.2e-07 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1635 14 48388315 48391525 Gso2g1929 2 43564144 43567321 GST