Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1914 ATGAAGTGGGAAAGTATAACCCTCTCTTCTCCTACACCTTGCACTCCAAACTCCAACACCAATTGGTTGGTGATGGAGGATAATAATAGCAGGAGCACAAAATGGACCTCTGAAGAGAACAAGCTCTTTGAAAATGCTCTTGCAGTGCATGATAAGGACACCCCGGATCGGTGGCACAGAGTGGCTGAGATGATTCCTGGAAAGACAGTGGTTGATGTGATAAGGCAGTACAAGGAGTTGGAAGTAGATGTTAGCAATATAGAAGCTGGTTTGATTCCAGTTCCTGGCTATAGTAGCACTGCTACCTCACCCTTCACCTTAGATTGGGTGAACACTCCTGGCTATGATGGGTTTAAAGGATGTGGAAAGAGATCTTCCTCAGTGAGACCGATTGAGCATGAAAGGAAGAAAGGAGTGCCTTGGACTGAAGACGAACATAAATTGTTTCTATTGGGTCTGAAGAAGTATGGGAAAGGTGATTGGAGAAATATATCTCGCAATTTTGTTATTACAAGAACTCCAACACAGGTTGCTAGTCATGCTCAGAAGTACTTCATAAGGCAGCTTTCAGGAGGCAAAGACAAGAGGAGGGCTAGCATACATGACATAACAACAGTGAATCTCACAGAAACCATAACAACTTCTTCAGAAGACACCAATGGATCCTCTTCACCACATGTGCTCTCACAGCAACAACAGCCAAATTCTACTCCTACTACACCAAGAACTCGTTTTCAGTGGAGTAATCAGTCTAACACAGGAGTAGCTGTGACTCTCAACCCTGCTCATGAAAGAGTCTTCATTTCTCATTATGGTGCTAACTCCTTTGGGGTTAAAATTGAGGGACAGAATCTTCATGAGTCTTCTTACTTGCGACCTCAGACACAGAACATGGTTTTCCAAATGCAACAGTCCTCTCAACACTAG 927 0.4358 MKWESITLSSPTPCTPNSNTNWLVMEDNNSRSTKWTSEENKLFENALAVHDKDTPDRWHRVAEMIPGKTVVDVIRQYKELEVDVSNIEAGLIPVPGYSSTATSPFTLDWVNTPGYDGFKGCGKRSSSVRPIEHERKKGVPWTEDEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETITTSSEDTNGSSSPHVLSQQQQPNSTPTTPRTRFQWSNQSNTGVAVTLNPAHERVFISHYGANSFGVKIEGQNLHESSYLRPQTQNMVFQMQQSSQH* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1914 308 ProSiteProfiles Myb-like domain profile. 133 185 IPR001005 -
Gso2g1914 308 SMART sant 31 83 IPR001005 -
Gso2g1914 308 SMART sant 137 187 IPR001005 -
Gso2g1914 308 ProSiteProfiles Myb-like domain profile. 27 81 IPR001005 -
Gso2g1914 308 PANTHER MYB TRANSCRIPTION FACTOR MYB51 6 288 - -
Gso2g1914 308 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 136 188 IPR006447 GO:0003677
Gso2g1914 308 Gene3D - 139 189 - -
Gso2g1914 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 189 IPR017930 -
Gso2g1914 308 MobiDBLite consensus disorder prediction 211 249 - -
Gso2g1914 308 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 6 288 IPR043363 -
Gso2g1914 308 Gene3D - 26 94 - -
Gso2g1914 308 ProSiteProfiles SANT domain profile. 141 189 IPR017884 -
Gso2g1914 308 SUPERFAMILY Homeodomain-like 33 85 IPR009057 -
Gso2g1914 308 CDD SANT 34 80 IPR001005 -
Gso2g1914 308 Pfam Myb-like DNA-binding domain 140 185 IPR001005 -
Gso2g1914 308 Pfam Myb-like DNA-binding domain 34 78 IPR001005 -
Gso2g1914 308 ProSiteProfiles SANT domain profile. 30 85 IPR017884 -
Gso2g1914 308 SUPERFAMILY Homeodomain-like 135 188 IPR009057 -
Gso2g1914 308 CDD SANT 140 185 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1914 Gso-Chr2 43405367 43407943 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso2g1914 Myb_DNA-binding 5.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1914 - - gmx:778067 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1613 14 48136790 48139309 Gso2g1914 2 43405367 43407943 GST