Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1904 ATGGGTTACTTATGTGATTTTTGTGGAGACCAGAGGTCCTTGGTGTACTGCCGCTCTGATTCCGCGTGCTTATGTTTGTCATGCGATCGAAATGTTCATTCTGCCAATGCACTTTCTAGGCGTCATTCGAGAACCCTTGTATGCGAGAGATGCAATTCACAACCTGCATTTGTGAGGTCTGTTGAAGAGAAAATTTCACTTTGTCAGAACTGTGATTGGTTGGGTCATGGTACCTCACCGTCTTCTTCGATGCACAAGAGGCAATCAATCAATTGCTACTCTGGCTGCCCTTCAGCGGCAGAATTTTCTTCAATATGGTCCTTTTTCTTAGACATCCCTTCTTTGGGTGAAGCATGTGAGCAGGAACTAGGTTTGATGAGCATTAATGAGAACATTCCTCCAGAAGGGCAGAATGTGTCTGGTTCAACTGAAGTGACTGATCTACCCAGCAAGGGTAAATCTTGGGCTGGCACACCTTCAATACCTGAGTCAAGCTCAGAACCTCGTATTCTGGACCAGCCGCCTGGACCTGCCAATGAATGTGTGCCCAAGTTGTACTGTCCTGGGAAGAAAGCTTCTGGAATATGTGAAGATGATGATCTATATGATGATTTCATCATGGATGAAGTTGATCTAGAACTTGAGAACTATGAGGAACTTTTTGGGATGGCTCTCAGTCACTCTGAAGAGCTTTTTGAAAATGGTGGAATTAATAGCTTATTTGAGGCAAAGGACATGTCTGCTAGTGCTGGTGATTCCCATTGTCAGGGTGCTGTTGCTGCTGAGGGATCGTCTGCTGGGTTGGTCAATCCTATCCAACCAGCATGCAGCAATGCAGCATCTGCAGATTCAGTGATGAGTACAAAAACTGAACCAATTGTTTGTTTTACGGCAAGGCAATCTCAATCAAACATTTCCTTTTCTGGTGTTACCAAAGATAGTGCTGGTGACTATCAAGACTGTGGTGCTTCTTCAATGCTTCTCATGGGAGAACCTCCCTGGTGTCCTCCTTGCCCTGAGAGTTCTCTGCATTCTGCTAACCGAAGCAATGCTGTCATGCGCTACAAGGAAAAAAAGAAGACCCGGAAGTTTGAGAAGAAAGTAAGATATGCCTCTCGCAAGGCTAGGGCTGATGTCAGAAAGCGTGTGAAGGGCCGATTTGTCAAAGCTGGTGATGTCTATGACTATGACCCTTTGAACCAAACCAGAAGCTACTGA 1218 0.4532 MGYLCDFCGDQRSLVYCRSDSACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRSVEEKISLCQNCDWLGHGTSPSSSMHKRQSINCYSGCPSAAEFSSIWSFFLDIPSLGEACEQELGLMSINENIPPEGQNVSGSTEVTDLPSKGKSWAGTPSIPESSSEPRILDQPPGPANECVPKLYCPGKKASGICEDDDLYDDFIMDEVDLELENYEELFGMALSHSEELFENGGINSLFEAKDMSASAGDSHCQGAVAAEGSSAGLVNPIQPACSNAASADSVMSTKTEPIVCFTARQSQSNISFSGVTKDSAGDYQDCGASSMLLMGEPPWCPPCPESSLHSANRSNAVMRYKEKKKTRKFEKKVRYASRKARADVRKRVKGRFVKAGDVYDYDPLNQTRSY* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1904 405 CDD Bbox1_BBX-like 4 47 - -
Gso2g1904 405 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gso2g1904 405 CDD Bbox1_BBX-like 47 90 - -
Gso2g1904 405 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 405 - -
Gso2g1904 405 ProSiteProfiles CCT domain profile. 348 390 IPR010402 GO:0005515
Gso2g1904 405 Pfam CCT motif 348 390 IPR010402 GO:0005515
Gso2g1904 405 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 405 - -
Gso2g1904 405 MobiDBLite consensus disorder prediction 136 176 - -
Gso2g1904 405 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1904 Gso-Chr2 43308497 43315906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1904 1 405 C2C2-CO-like Transcription Factor Family AT3G07650 55.819 3.58e-151 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso2g1904 CCT 7.5e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1904 - - gmx:100787695 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1603 14 48025628 48033062 Gso2g1904 2 43308497 43315906 GST