Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1900 ATGGGAGAGGGAGAGAACACAGAAATAGAAATAGAAACAGAAACAGAATCAGAAGCAACATCGACGACATGGAGCCTCGGAAAACACACTCAGATAATCGGACTTTCGGAGAAGCTCATAAATGGGAACAACCTCAGCGCCAAGATTGAGGCCGCGAGGGAGATAAGGAAGATGGTTCGGAAATCGTCGTCGTCGTCGAAGACGCGCGCGAAGCTTGCCGCTGCGGGTGTGATCGAACCGCTCGTGCTGATGCTCTCTTCTTCCAACCTCGATGCTCGCCAATCCTCTCTCCTCGCTCTCCTCAACCTCGCTGTTCGCAACGAACGAAACAAGGTCAAAATAGTGACAGATGGTGCCATGCCTCCACTGGTGGAGCTCCTCAAGATGCAAAATAGCGGTATACGAGAATTAGCTACAGCTGCAATCTTGACACTCTCAGCTGCCACATCCAACAAGCCCATTATTGCTGCTTCTGGAGCCGGACCTCTCCTTGTTCAAATTCTCAAATCTGGAAGTGTTCAAGGAAAAGTTGATGCTGTTACAGCCCTCCATAATCTTTCTACTGGCATTGAGAATTCCATTGAACTTCTTGATGCAAGTGCTGTTTTCCCTCTGCTCAACCTCCTTAAAGAGTGCAAGAAGTATTCCAAGTTTGCAGAAAAAGCCACAGCACTGCTTGAAATCCTTTCCAACTCCGAAGAAGGACGAACTGCAATCTCAATTGCAGATGGTGGAATCTTAACGCTAGTAGAGACAGTTGAAGATGGATCACTTGTCAGCACAGAACACGCTGTTGGAACTCTGCTATCATTATGTCGAAGCTGTCGAGATAAATACCGGGAACTGATTCTTAAAGAAGGAGCAATTCCGGGTCTGTTACGTCTGACAGTGGAGGGCACAGCTGAAGCTCAAGATAGAGCACGTGTGCTTCTGGATTTGCTCAGAGATTCTCCCCCAGAAAAAAGACTAACCTCAACAGTTTTGGAGAAAATTGTTTATGACATTGCTGAACGGGTAGATGGAGCAGATAAAGCTGCTGAAACTGCCAAACGGTTATTGCAAGATATGGTTCAAAGGAGTATGGAACACAGCATGAAATGCATCCAGCATAGGGCTGCATCTTGTACTCCTATTCCATCCACTTGA 1146 0.4686 MGEGENTEIEIETETESEATSTTWSLGKHTQIIGLSEKLINGNNLSAKIEAAREIRKMVRKSSSSSKTRAKLAAAGVIEPLVLMLSSSNLDARQSSLLALLNLAVRNERNKVKIVTDGAMPPLVELLKMQNSGIRELATAAILTLSAATSNKPIIAASGAGPLLVQILKSGSVQGKVDAVTALHNLSTGIENSIELLDASAVFPLLNLLKECKKYSKFAEKATALLEILSNSEEGRTAISIADGGILTLVETVEDGSLVSTEHAVGTLLSLCRSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARVLLDLLRDSPPEKRLTSTVLEKIVYDIAERVDGADKAAETAKRLLQDMVQRSMEHSMKCIQHRAASCTPIPST* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1900 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 200 244 IPR000225 GO:0005515
Gso2g1900 381 Pfam Armadillo/beta-catenin-like repeat 107 146 IPR000225 GO:0005515
Gso2g1900 381 MobiDBLite consensus disorder prediction 1 15 - -
Gso2g1900 381 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 26 348 - -
Gso2g1900 381 PANTHER U BOX DOMAIN-CONTAINING 26 348 - -
Gso2g1900 381 SMART arm_5 232 273 IPR000225 GO:0005515
Gso2g1900 381 SMART arm_5 106 147 IPR000225 GO:0005515
Gso2g1900 381 SMART arm_5 65 105 IPR000225 GO:0005515
Gso2g1900 381 SMART arm_5 189 231 IPR000225 GO:0005515
Gso2g1900 381 SMART arm_5 148 188 IPR000225 GO:0005515
Gso2g1900 381 Gene3D - 13 376 IPR011989 -
Gso2g1900 381 SUPERFAMILY ARM repeat 39 321 IPR016024 -
Gso2g1900 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 76 118 IPR000225 GO:0005515
Gso2g1900 381 MobiDBLite consensus disorder prediction 1 22 - -
Gso2g1900 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 118 160 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1900 Gso-Chr2 43257195 43262457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1900 30 316 U-box Gene Family AT3G54790 38.194 2.25e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1900 K08332 - gmx:100785760 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1599 14 47981751 47987595 Gso2g1900 2 43257195 43262457 GST