Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1894 ATGGGTGCCGTCGTCGAGTGTTACCCACAGCCGCGCACGGCGGTGCTGTCCCTGAACACCTTGCCGTTAGGGTTCCGTTTCCGTCCCACCGATGAGGAGCTTATTGACTACTACCTCCGCTCGAAGATCAACGGAAATGGTGATGATGTTTGGGTTATTCGTGAGATTGATGTCTGCAAATGGGAGCCTTGGGACTTGCCTGATTTGTCAGTGGTACGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGACCGGAAGTATCCGAACGGGCACAGGTTGAACCGAGCTACGAGTCATGGCTATTGGAAGGCAACGGGAAAGGATCGGAGGATTAAGTCTGGCTCCACCTTGATTGGAATGAAGAAGACTCTTGTTTTCTATACCGGTCGTGCTCCCAAGGGGAAGAGGACCAATTGGGTTATGCATGAGTACAGGCCTACGCTGAAGGAGCTTGATGGTACCAATCCTGGACAGAATCCATATGTCCTTTGTCGATTATTTAAGAAACAAGATGAGAGTCTTGAAGCTTCAAACGGTGATGATGTGGATCGGACTGCTTCAACTCCTATGACTGCCAATTACTCTCCAGACGAAATACAATCTGATTCAGCTCTGGTTCCAGCATCTTCCTCACAGGTTACTGAAGATGATAAGCCTCTACCAGTTATTTCTGAGAACTCTGAGGAAGCAATATCCAACATTATAACCCCTGGTGAGATTCATAGTGACGGATGTAATGCTCCTGATGCACAAGATCAAATTGTAGAACCAGTTGCAGAGGAGGATCAGCCGTTGAACGTGGACATATTTTATGACCCAACAAATCTGCCATTAGACGACAAATTATTCTCCCCTGTCCATGCACATTTCCCAACAGATTTTTATTATCAAGCTAACAATCAATCAGAACTTCAGTATGGTACAAATGAGAATATTTCAGAATTTTTTGACTCGGTTGTTAATTGGGATGCGTTCTCTCATGATACTAGCAGTCTAGATCTGAGCTCATCCTTCCTTATTAATAATACGGACAATGGATCAGGCAGTGACTCGGATGTTGAAATGACCAATATGCCACATCTGCAAGCATTACATAATTATCCTAAGGAGGCAGTTGAGCAGAAGAGCAATGTGGGATTATTTCAGAACAATTTCCAGATGGCGTTGTCAAATGATAGTACTATGGGCCAAGTGCACAATATGGTCAACTATTGCGAGCAACCAAGAAACTTTGATGCATTTGTTAGTGCTGATACTGGAATCAGAATAAGGACTCGTCCAGGAAGAAATGAACAGCCAAACATGGACACGATGGTACAATCACAAGGTATTGCACCAAGGAGAATACGATTGGGAGTTGTTAGGCGTCCGCTTGGTTCCCAGGATGGGAGTTGTGCTTGTGCCCCAGAAGACCATAATTCAAAAACCATCATTACTGCAGAGAAAAAAGCTTCAGAATCAGAAAACCATGCTGCCGATGGGAGTTCCACTGTTTCTGACATGAGTTCCACTGTTACAGATGATGTGGATGAACCAGAGGAGGCATCTCCCGAGTCAACCGACCTAAGAAACATTAGTGAGAAACATGTTGCAACTGCAGAATCCGTCGCAGGGTCGAAAGTCCTTCTAGTGAACAGAAGGGTCCACTACACCTCAAAGGTTTCCTCTAACCGTGCCACGTGGTCTAATGTTCTCGCAGTTTCTGCCGCTGTATTGGTCTCAGCAATACTCCTTGTTAATATATGGGCATATGTCAGATCTTAA 1770 0.4525 MGAVVECYPQPRTAVLSLNTLPLGFRFRPTDEELIDYYLRSKINGNGDDVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATSHGYWKATGKDRRIKSGSTLIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKQDESLEASNGDDVDRTASTPMTANYSPDEIQSDSALVPASSSQVTEDDKPLPVISENSEEAISNIITPGEIHSDGCNAPDAQDQIVEPVAEEDQPLNVDIFYDPTNLPLDDKLFSPVHAHFPTDFYYQANNQSELQYGTNENISEFFDSVVNWDAFSHDTSSLDLSSSFLINNTDNGSGSDSDVEMTNMPHLQALHNYPKEAVEQKSNVGLFQNNFQMALSNDSTMGQVHNMVNYCEQPRNFDAFVSADTGIRIRTRPGRNEQPNMDTMVQSQGIAPRRIRLGVVRRPLGSQDGSCACAPEDHNSKTIITAEKKASESENHAADGSSTVSDMSSTVTDDVDEPEEASPESTDLRNISEKHVATAESVAGSKVLLVNRRVHYTSKVSSNRATWSNVLAVSAAVLVSAILLVNIWAYVRS* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1894 589 MobiDBLite consensus disorder prediction 492 507 - -
Gso2g1894 589 ProSiteProfiles NAC domain profile. 21 171 IPR003441 GO:0003677|GO:0006355
Gso2g1894 589 Gene3D NAC domain 30 175 IPR036093 GO:0003677|GO:0006355
Gso2g1894 589 SUPERFAMILY NAC domain 13 171 IPR036093 GO:0003677|GO:0006355
Gso2g1894 589 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 16 438 - -
Gso2g1894 589 MobiDBLite consensus disorder prediction 182 219 - -
Gso2g1894 589 MobiDBLite consensus disorder prediction 484 525 - -
Gso2g1894 589 MobiDBLite consensus disorder prediction 176 227 - -
Gso2g1894 589 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 16 438 - -
Gso2g1894 589 Pfam No apical meristem (NAM) protein 22 147 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1894 Gso-Chr2 43163914 43168012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1894 14 453 NAC Transcription Factor Family AT4G35580 42.794 2.72e-99 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso2g1894 NAM 4.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1894 - - gmx:100170715 1164.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1593 14 47893279 47897243 Gso2g1894 2 43163914 43168012 GST
Gso2g1894 2 43163914 43168012 Gso4g1899 4 49213301 49216629 PCT
Gso4g1899 4 49213301 49216629 Gso2g1894 2 43163914 43168012 PCT