Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1882 ATGAGAGGAAGGAGCTATAGTCCATCGCCTCCTCCTCCACGTTACAGCAGAAGAGGAGGAGGGAGGAGTCCCAGCCCTAGGGGCCGCTATCCTCCCCGTCCCCGACAACAAGATCTCCCTACCAGCCTTCTTGTTCGTAACCTTCGTCATGACTGTAGGCCTGAGGATCTTCGCAGACCTTTTGGTCAATTTGGTCCTCTCAAGGACATTTACCTTCCTAAGGATTACTACACTGGAGAACCCCGTGGCTTTGGTTTTGTCCAATTTGTGGATCCTGCGGATGCTGCTGATGCCAAATATCATATGGATGGTCAAGTTCTTCTTGGTCGGGAGCTCACTGTTGTTTTTGCTGAAGAGAATAGAAAGAAGCCAACTGAGATGAGGACAAGAGAGAGAAGGGGTCGATTTTCTGATCGTAGGAGGTCTCCTCCTCGTTACTCTCGTTCACCTCGCTACTCTCGGTCTCCACCACCACGTCATAGATCTCGTTCTCACAGTCGTGACTATTATTCTCCTAAACGAAGGGAGTATTCAAGATCTGTCTCCCCTGAGGGTAGAAGGTACAGTCGAGAAAGATCATATTCACAGCATAATAGAGAGAGGTCATACTCACGTTCCCCACCTTATAATGGGGGCTCAAGGAGCCGTAGTCAGAGTCCAGCAAAGGGCCCAGTCCGGAGCAGGAGTCCGAGTCTGAATCGAGATGAAAGGGAACCAGCCCGAGGTAGGTCCCCCAGTCAGTGA 744 0.5094 MRGRSYSPSPPPPRYSRRGGGRSPSPRGRYPPRPRQQDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGEPRGFGFVQFVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPTEMRTRERRGRFSDRRRSPPRYSRSPRYSRSPPPRHRSRSHSRDYYSPKRREYSRSVSPEGRRYSRERSYSQHNRERSYSRSPPYNGGSRSRSQSPAKGPVRSRSPSLNRDEREPARGRSPSQ* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1882 247 Gene3D - 33 151 IPR012677 -
Gso2g1882 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
Gso2g1882 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 112 IPR000504 GO:0003723
Gso2g1882 247 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 231 - -
Gso2g1882 247 MobiDBLite consensus disorder prediction 162 199 - -
Gso2g1882 247 MobiDBLite consensus disorder prediction 121 145 - -
Gso2g1882 247 SUPERFAMILY RNA-binding domain, RBD 40 146 IPR035979 GO:0003676
Gso2g1882 247 MobiDBLite consensus disorder prediction 1 43 - -
Gso2g1882 247 MobiDBLite consensus disorder prediction 229 247 - -
Gso2g1882 247 SMART rrm1_1 42 115 IPR000504 GO:0003723
Gso2g1882 247 MobiDBLite consensus disorder prediction 121 247 - -
Gso2g1882 247 MobiDBLite consensus disorder prediction 200 226 - -
Gso2g1882 247 MobiDBLite consensus disorder prediction 1 17 - -
Gso2g1882 247 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1882 Gso-Chr2 43038600 43041733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1882 41 172 Eukaryotic Initiation Factors Gene Family AT4G34110 27.273 5.07e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1882 K12900 - gmx:100779321 353.599