Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1875 ATGAAGTTCCAATTCCATGCAGTTCCATTTGTTCTACTAAGCTTCACAGTGTCTCTCTTTGGCCTAATTGAGGCTGACTTGAACTCTGACAAACAAGCTCTTCTTGAGTTCTTTTCCAATGTTCCGCATGCCCCAAGGCTAAACTGGAGTGAGTCCACTCCAATTTGCACATCTTGGGCTGGTGTCACTTGCAACCAAAATGGAACTAGTGTCATTGAAATCCATCTTCCAGGGGCTGGATTCAAAGGCTCGATTCCAGAGAACAGCCTAGGAAAACTTGATTCTCTTAAAATCCTGAGCCTTCATTCCAATGGCCTTAGAGGAAACCTTCCTTCTGACATTCTCTCCATTCCTTCACTCCAATATGTAAACCTGCAGCAGAATAACTTCTCAGGCCTAATCCCTTCCTCTATCTCACCAAAACTCATAGCATTGGATATTTCCTCTAACAACTTCTCTGGCAGTATTCCAACTACCTTTCAGAATCTTAGTAGACTCACCTGGTTGTATCTCCAAAACAATTCAATCTCTGGAGCTATCCCTGACTTTAAAAACCTTACAAGTCTCAAGTATTTGAATTTGAGCTATAACAACTTGAATGGCTCAATTCCAAATTCCATCAACAATTATCCATACACTTCTTTTGTTGGAAACTCTCACTTGTGTGGACCACCTCTCAATAACTGTTCTAAAGCTTCCAATCCATCTTCTTCTACTTCCTCTCTTTCTCCTTCTCATTCTCCTGTTTCTCAACCACTCTCTCCAGCAGAAACTCCACAAAATAGAACTGCTACCACTTCAAAGAGTTACTTTGGCCTAGCTACTATACTTGCTCTAGCAATTGGAGGCTGTGCCTTTATCTCCCTCCTAGTTTTGATCATCTTTGTATGCTGTTTGAAGAGGACCAAGAGTGAAAGCAGCGGCATACTGACAGGAAAGGCACCTTGTGCTGGAAAGGCTGAGATTTCAAAGGGTTTTGGGAGTGGAGTGGAAGAGGCTGAAAAGAACAAGTTGTTCTTCTTTGAAGGTTGCTCTTACAGTTTTGACCTTGAAGACTTGTTAAAGGCTTCAGCTGAAGTTCTTGGAAAGGGGAGCTATGGAACAACATATAGAGCTGCTTTGGAGGATGGAACAACAGTGGTGGTTAAAAGGTTAAGGGAAGTTCTAGTTGGAAAGAAAGAGTTTGAGCAACAGATGGAGGTTGTAGGAAGAATTGGAAGGCACCCGAATGTCATGCCCCTTAGAGCTTATTACTATTCCAAAGATGAGAAACTTCTAGTCTATGACTACATTTCCAGAGGCAGCTTGTTTTCCTTGTTGCATGGAAACAGAGGCATGGGAAGAGCTCCGTTAGACTGGGATTCAAGAATGAAGATTGCACTTGGAGCTGCAAAGGGAATTGCTTCCATTCACACTGATCACATGGACTCAAAACTTACTCATGGCAACATCAAGTCTTCCAATGTGCTCATAAACCAACAACATGATGGCTGCATCACTGATGTAGGACTCACTCCTATGATGAGCACTCAATCAACCATGTCAAGAGCCAATGGCTACCGTGCTCCCGAAGTAACCGAGTACCGGAGGATCACTCAGAAGTCTGATGTTTACAGCTTTGGGGTGCTCCTATTAGAACTGCTCACTGGCAAGGCGCCACTAGGATATCCTGGCTATGAGGACATGGTTGATCTTCCTAGGTGGGTGAGGTCTGTGGTTCGTGAGGAATGGACGGCTGAAGTTTTCGACGAGGAACTTCTTAGAGGGCAGTATTTTGAAGAGGAGATGGTGCAGATGCTTCAGATTGCACTTGCCTGTGTGGCAAAGGTATCAGATAATAGGCCAACAATGGATGAAACTGTTAGGAACATAGAGGAAATTAGGCTTCCTGAATTGAAGAACCGTAACACATCATCTGAATCTGATTCTAATGTACAAACTCCATGA 1947 0.4335 MKFQFHAVPFVLLSFTVSLFGLIEADLNSDKQALLEFFSNVPHAPRLNWSESTPICTSWAGVTCNQNGTSVIEIHLPGAGFKGSIPENSLGKLDSLKILSLHSNGLRGNLPSDILSIPSLQYVNLQQNNFSGLIPSSISPKLIALDISSNNFSGSIPTTFQNLSRLTWLYLQNNSISGAIPDFKNLTSLKYLNLSYNNLNGSIPNSINNYPYTSFVGNSHLCGPPLNNCSKASNPSSSTSSLSPSHSPVSQPLSPAETPQNRTATTSKSYFGLATILALAIGGCAFISLLVLIIFVCCLKRTKSESSGILTGKAPCAGKAEISKGFGSGVEEAEKNKLFFFEGCSYSFDLEDLLKASAEVLGKGSYGTTYRAALEDGTTVVVKRLREVLVGKKEFEQQMEVVGRIGRHPNVMPLRAYYYSKDEKLLVYDYISRGSLFSLLHGNRGMGRAPLDWDSRMKIALGAAKGIASIHTDHMDSKLTHGNIKSSNVLINQQHDGCITDVGLTPMMSTQSTMSRANGYRAPEVTEYRRITQKSDVYSFGVLLLELLTGKAPLGYPGYEDMVDLPRWVRSVVREEWTAEVFDEELLRGQYFEEEMVQMLQIALACVAKVSDNRPTMDETVRNIEEIRLPELKNRNTSSESDSNVQTP* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1875 648 ProSiteProfiles Protein kinase domain profile. 355 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1875 648 ProSiteProfiles Leucine-rich repeat profile. 188 210 IPR001611 GO:0005515
Gso2g1875 648 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Gso2g1875 648 Gene3D Phosphorylase Kinase; domain 1 321 430 - -
Gso2g1875 648 PANTHER LRR RECEPTOR-LIKE KINASE 5 648 - -
Gso2g1875 648 Pfam Leucine Rich Repeat 188 208 IPR001611 GO:0005515
Gso2g1875 648 Pfam Protein kinase domain 359 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1875 648 SUPERFAMILY L domain-like 40 225 - -
Gso2g1875 648 MobiDBLite consensus disorder prediction 233 261 - -
Gso2g1875 648 Gene3D Ribonuclease Inhibitor 140 230 IPR032675 -
Gso2g1875 648 ProSitePatterns Protein kinases ATP-binding region signature. 361 392 IPR017441 GO:0005524
Gso2g1875 648 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
Gso2g1875 648 Gene3D Ribonuclease Inhibitor 28 139 IPR032675 -
Gso2g1875 648 PANTHER OS05G0588300 PROTEIN 5 648 - -
Gso2g1875 648 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515
Gso2g1875 648 Gene3D Transferase(Phosphotransferase) domain 1 431 646 - -
Gso2g1875 648 SUPERFAMILY Protein kinase-like (PK-like) 359 623 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1875 Gso-Chr2 42955997 42960408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1875 8 647 Receptor kinase-like Gene Family AT5G58300 56.744 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso2g1875 Pkinase 1.9e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1875 - - gmx:100786974 1251.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1875 2 42955997 42960408 Gso4g1875 4 49019219 49024484 PCT
Gso4g1875 4 49019219 49024484 Gso2g1875 2 42955997 42960408 PCT