Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1871 ATGGGTAGGCAAAAAAGTAAACCACAGCGAGCAGGCGGGATAATACTAGAGACAAATGCTGCTGCTGAGACAGAATTGGATAAACAAAATGTTATAGAAGGAGGGAAAGAAACAAAGGGTGATTCTAGTGGCATTGATAAACCTTATTTTGTTGAGGTTGATCGGTGTGGTTGGTTATCGAGTGAACACCTTGATATTTCTGAGGTTGTTTTGAGTGATTTAAATTTGAGAGAAGGTTTTTCTGGTTTTGAACTGTCTGAGGATTTTTATCGGGATCAGCAGTACTTGTTAAGATTTCAGGTTTGTAATGTCAGTAATGTTCTTGGTCGAATTAAATTAGGGCATTGGCCTGTGATACCCTATACTGATATTCATCTGGAGTTTGTAAGAAGAGTTACCATTGACCATGTGGAAACATATACAGTGTTGTTATCTGGTATTTTTGATGGACCTGATGAAGGTGTTACTGGTCTTCTTCACTTGGCAAGTTTGAAGTTTGTTACATTGAGGCCAGTTCTTGGGGCTAGGCTTTCTGAGGAAATTTCCTCCCTCCGGATAAGGGTTGAGGTATTAAAGAGTGCCTTTGATGCATGCGAGTCGCTTCTTGATAGTTCTAGACAACTATGGAAAAAGAGTATGGTGAATGTAATGTCTTGGCTACGTCCAGAAATAATGACTTCGGAAGTTAGGTATGGGTTTGGTACCTGTATGAAAATGGAAGTTGATCCGCAGATAGAGATGGCAGATGACACTTGCAAGGCAAGGAAACATGCAAGGTTCGATCCTGCAGGTTTCTGTGAAGCCATTAAGCCTTCAAAATCAGAGCCAATGCTCAAAGATGACATACCAGAGTTACTTCCTAAATTGAGGCCATATCAACGGCGTGCAGCTTTCTGGATGGTAGAACGGGAGAAAGCAGTGGAAGAAAGTCGGGGTGAAAGAGAAAGGAATCTGTTTCATTCTCCATTATGTATACCTGTGGATTTTCTGGACACCAGTTCTCAAATCAGTCAAATGTTTTTCAATCCATTCAGTGGAAGTATTTCATTGTGCCCAGAGACTTCTTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGGTTGGGAAAAACTGTTGAATTGCTTGCTTGCGTCTTTGCTCACCGTAGACAAGCATCTGGAAGTGACATATTAATTGATTTAGAACCCCAAGCTAATGGGGACCAAAAAGTCACTCTGAAAAGACTTAAAAGAGAGCGTGTGGAATGCATATGTGGAGCTGTGAGCGAAAGTCTTAAATATGAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCGGATTGTGTTGGTTATTCACCTAAAGGAAAATCTTTGAAATCAAAACAAGGATGTGAAAGCAAGACATTTAAAACCACCATAGCTGTGAGGGACGGAGAATATGTATGTCAGATGTGCTCTGAACTAATACAAGCTACTGAATCTCCTATTGCCTCTGGTGCCACTCTCATCATCTGCCCAGCTCCTATTTTGCCCCAGTGGCATGACGAAATTATACGCCATACACATCAGGGCTCCTTGAAAACTTGTATTTATGAAGGTGTGCGAGACACATCTTTTTCCAATACGTCTCTGATGGATATCGGTGATCTTGCCAGTGCTGACATTGTATTAACTACATATGATGTGCTTAAAGAAGATTTGTCCCATGATTCTGATAGGCATGAAGGTGATCGGCACTTTCTGAGGTTTCAGAAAAGGTACCCAGTTATCCCAACTCTTCTTACAAGAATATACTGGTGGAGGGTTTGCTTGGATGAGGCACAGATGGTGGAGAGTAATACTACTGCTGCAACTGAAATGGCTCTAAGACTCCATTCAAAGTATCGTTGGTGCATTACTGGTACCCCAATTCAGCGAAAGCTTGATGACTTGTATGGACTTCTAAGATTCCTTAAAGCTAGTCCTTTTGATAGATACAGGTGGTGGACTGATGTTATTCGAGATCCTTATGAGAAGGAAGATGTGGGAGCTATGGAATTTACGCACAAAATTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCTGATGAATTGGAACTTCCCTCCCAAGAGGAGTGCCTCTCTTGGCTTACACTCTCACCAGTCGAGGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCCCATGAAGTTATTGAAAGTTTGAGAAGTGATATTCTTAATAGAAAAGGCCCAGATTCTGTCTCTTTGAATGGTTCTTCTGATCCTTTAATCACTCACACCGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGCCAAGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGCTCGCTGCAGCAGTCACCTATGACCATGGAGGAAATACTAATGGTTCTTATAAGCAAGACAAAGATAGAAGGTGAGGAAGCTCTCAGGAAGTTAGTTATTGCTCTGAATGCACTTGCAGCTATTGCCGCAATACAAAATGATTTTTCTCAAGCTACATTACTGTACAGTGAAGCTCTTTCTTTGGCTGAAGAGCAGTCTGAAGATTTCCGCCTGGACCCATTGTTAAATATACACATTCATCATAATCTTGCTGAAATACTCCCACTGGTTCCAAACTTTGCTCTAATATCGCCATCCAAAGGAAAGCAGTTCTCTGGAACTTCTAAATTTAAGATGACCAAAAGGCATTTAAGTGTGAAGGTTGAGCATTGTCATGAGAAGAGGCAAAAAATAAGTGGTTGTGATGACGTAAATGTAACAGTGCTGTCAGAACCATCAGATGTTGCATTTAGCCATTCAGAAAATGACTTAAATGAGGATCAGGAATTTGATAGTTTATCAGCCATCAATTCTCTGATAGCAGAATGTGAAGATTCAAAACAGAAATACTTATCTGTCTTCAGTTCGAAGCTATCTACATCCCAACAGGAGTTTCAAAATTCTTACACGCAGGTCTGTAATGCATATCATGACAGCAGAACAGATCAAGATACATTTTGGTGGTTAGAAGCACTCCATCATGCTGAGCAGAACAAAGATTTCTCCACTGAGTTGATTAGGAAGATTGAAGAAGCCATCTCAGGAACTTCAAACAATTCAAAGTCATCAAGAGTAACTGCTCGTTTCCGAAGCATAAGCTCTCTGAAGTATCAAATTCAGACAGCTTTGGACCAGTTAGAGGCCTCTAGAAAAATGCTACTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGAAGAAGATATTGAACGTGTGGGTAAATGTCGGAATTGTCAGCCTAATTGTGATGGTCCCCCTTGCATTTTGTGTGAACTAGATGAATTGTTTCAGGATTATGAAGCAAGACTCTTTGTTCTTAAGAATGAACGTGGAGGGATAATTTCATCTGCTGAGGAGGCTGTAGATTTTCAGAAGAAAAACTTTGCATTGAATCATTTCCTCTCAAAGCTATCACAATCTAATCACAGTTCTACAGTATCTGATATTGGTCATGAAGAATCAAAGAAAAGGAATGTTGGACAAAGAGTTGTGGTTTCAAAATCAGCATCTGAGTTGGAGCTAATTCTTGGAGTTTTAAAGAACTACTGCAAGTCTCGATTAGGAAGAGACAGAGTCTCAGCTGCCACCAAGCATTTACATGTTTTTGAGGGAATGCGAAAGGAGTTTGGCCACGCAAGGTCTTTGGCATTAGCTCAAGCTATGTATCTGCGTGCACATGATGAAATAAAGATGGCAGTTTCTCGTTTGCACCTAAGGGCGAATGAAGATGATAAATCTCTTGATGCTTTAGGTGAAAATGAATTAGCTGCAGCTAGCTCAAACTTTTCCCATGATAAGTTTATGTCATTGACCATGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCAATTCGAAAGTCCAACTAGTTCTTCATTCACACGAGAGACAACTGCAACGCCAAACTCTACAGAAGAGAAGGATGCACTTTTATCTAAAAGTGACGACGAAACATGCCCAATTTGCCAAGAAAAGCTGGGCAAACAGAAAATGGTTTTTCAATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAAAATAGCAAGCTTCATAATTGGGTGATGTGCCCTACATGTCGACAGCATACTGATTTTGGAAACATTGCTTATGCTGTTGATGCACAGCATGAATCTTCCGATCCTTCAGTGCTGCATCCAATTGACAGCAGTGAAAAATTTGAAGCATCCATTAGTGTTAAAGGTTCATATGGAACCAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGGTAAAGGCTAATGATCATAGAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAGCATGCCTTCGCTGCCAATAACATTACCTATATTCGGATGAAGGGAGGCAGAAAAGCACATGTTGCTATCAGTCAATTTAGAGGAAAACAAAATGGCACAAAAAAATGTGAGGGGTCAACACCAAAATCTATTCAGGTGTTGTTGCTTTTAATTCAACATGGAGCCAATGGACTCAATCTATTGGAAGCACAGCATGTAGTCCTTGTAGAACCATTACTCAATCCAGCTGCCGAAGCACAAGCAATCAGTCGTGTACATCGGATTGGACAAAAAAATAAGACCCTCATTCATCGTTTCATTGTAAAAGACACGGTTGAAGAGAGCATATATAAATTGAACAGAAGCAGGAGCAATCATTCGTTCATCAGTGGGAACACTAAAAATCAAGATCAACCTGTTCTAACCCTGAAGGATGTGGAAGCCTTGCTTTCTAGAGCACCACTAACAATGCCAGAAAGTGATGAAAATCCTAACAGGGACACGAATCTTAGACACTTGCCACCATCAGTGGCAGCTGCTGTAGCTGCTGAGAGGAGACTTAATGAACAAAGGACATGA 5016 0.4059 MGRQKSKPQRAGGIILETNAAAETELDKQNVIEGGKETKGDSSGIDKPYFVEVDRCGWLSSEHLDISEVVLSDLNLREGFSGFELSEDFYRDQQYLLRFQVCNVSNVLGRIKLGHWPVIPYTDIHLEFVRRVTIDHVETYTVLLSGIFDGPDEGVTGLLHLASLKFVTLRPVLGARLSEEISSLRIRVEVLKSAFDACESLLDSSRQLWKKSMVNVMSWLRPEIMTSEVRYGFGTCMKMEVDPQIEMADDTCKARKHARFDPAGFCEAIKPSKSEPMLKDDIPELLPKLRPYQRRAAFWMVEREKAVEESRGERERNLFHSPLCIPVDFLDTSSQISQMFFNPFSGSISLCPETSSPYVFGGILADEMGLGKTVELLACVFAHRRQASGSDILIDLEPQANGDQKVTLKRLKRERVECICGAVSESLKYEGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCESKTFKTTIAVRDGEYVCQMCSELIQATESPIASGATLIICPAPILPQWHDEIIRHTHQGSLKTCIYEGVRDTSFSNTSLMDIGDLASADIVLTTYDVLKEDLSHDSDRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNTTAATEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLKASPFDRYRWWTDVIRDPYEKEDVGAMEFTHKIFKQIMWRSSKEHVADELELPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRSDILNRKGPDSVSLNGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRKLVIALNALAAIAAIQNDFSQATLLYSEALSLAEEQSEDFRLDPLLNIHIHHNLAEILPLVPNFALISPSKGKQFSGTSKFKMTKRHLSVKVEHCHEKRQKISGCDDVNVTVLSEPSDVAFSHSENDLNEDQEFDSLSAINSLIAECEDSKQKYLSVFSSKLSTSQQEFQNSYTQVCNAYHDSRTDQDTFWWLEALHHAEQNKDFSTELIRKIEEAISGTSNNSKSSRVTARFRSISSLKYQIQTALDQLEASRKMLLDRLLEIDQTMEKPKEEDIERVGKCRNCQPNCDGPPCILCELDELFQDYEARLFVLKNERGGIISSAEEAVDFQKKNFALNHFLSKLSQSNHSSTVSDIGHEESKKRNVGQRVVVSKSASELELILGVLKNYCKSRLGRDRVSAATKHLHVFEGMRKEFGHARSLALAQAMYLRAHDEIKMAVSRLHLRANEDDKSLDALGENELAAASSNFSHDKFMSLTMLSQIKGKLRYLKGLVQSKQKLQFESPTSSSFTRETTATPNSTEEKDALLSKSDDETCPICQEKLGKQKMVFQCGHVTCCKCLFAMTEKRLQNSKLHNWVMCPTCRQHTDFGNIAYAVDAQHESSDPSVLHPIDSSEKFEASISVKGSYGTKIEAVTRRILWVKANDHRAKVLVFSSWNDVLDVLEHAFAANNITYIRMKGGRKAHVAISQFRGKQNGTKKCEGSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIYKLNRSRSNHSFISGNTKNQDQPVLTLKDVEALLSRAPLTMPESDENPNRDTNLRHLPPSVAAAVAAERRLNEQRT* 1672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1871 1671 CDD PHD_TCF19_like 419 484 - -
Gso2g1871 1671 SMART PHD_3 417 485 IPR001965 -
Gso2g1871 1671 Pfam Zinc finger, C3HC4 type (RING finger) 1358 1405 IPR018957 GO:0046872
Gso2g1871 1671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 1627 IPR027417 -
Gso2g1871 1671 Gene3D - 349 399 IPR038718 -
Gso2g1871 1671 Coils Coil 1659 1671 - -
Gso2g1871 1671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 689 IPR027417 -
Gso2g1871 1671 SUPERFAMILY FYVE/PHD zinc finger 414 486 IPR011011 -
Gso2g1871 1671 ProSiteProfiles Zinc finger RING-type profile. 1358 1406 IPR001841 -
Gso2g1871 1671 Pfam SNF2-related domain 292 787 IPR000330 GO:0005524|GO:0140658
Gso2g1871 1671 CDD DEXQc_SHPRH 289 691 - -
Gso2g1871 1671 ProSitePatterns Zinc finger PHD-type signature. 418 484 IPR019786 -
Gso2g1871 1671 MobiDBLite consensus disorder prediction 1633 1652 - -
Gso2g1871 1671 SMART ultradead3 285 661 IPR014001 -
Gso2g1871 1671 MobiDBLite consensus disorder prediction 1326 1346 - -
Gso2g1871 1671 Pfam Helicase conserved C-terminal domain 1453 1575 IPR001650 -
Gso2g1871 1671 SMART helicmild6 1483 1575 IPR001650 -
Gso2g1871 1671 Gene3D - 1409 1652 IPR027417 -
Gso2g1871 1671 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1455 1626 IPR001650 -
Gso2g1871 1671 MobiDBLite consensus disorder prediction 1326 1350 - -
Gso2g1871 1671 SMART ring_2 1358 1405 IPR001841 -
Gso2g1871 1671 CDD SF2_C_SNF 1449 1586 - -
Gso2g1871 1671 Gene3D - 483 712 IPR038718 -
Gso2g1871 1671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 482 IPR013083 -
Gso2g1871 1671 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1652 - -
Gso2g1871 1671 SUPERFAMILY RING/U-box 1353 1410 - -
Gso2g1871 1671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1332 1408 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1871 Gso-Chr2 42871702 42886040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1871 496 785 RAD5 or RAD16-like Gene Family AT5G43530 32.414 7.31e-34 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso2g1871 SNF2_N 5.5e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1871 K15710 - gmx:100776659 3317.32