Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1856 ATGTCCAAGCCACTGCTAGGCATAGCGGAAGAGGAAGGTCAAAGCAATGTCACTTTGTTGGTTTCTTCCTCAGCCACCATGGAAAGTGTGTGCCTGAATAGCTCAAAACTGAAAGAGCGCAACTACATGGGGTTATCTGATTGTTCATCTGTGGACAGCTCCGCGCCGTCCTTCTCAGATGAGACTAAGAGCAATCTGAACCTCAAGGCTACTGAGCTCAGACTGGGGCTTCCGGGGTCGCAATCTCCCGAACGAGATTCAGATCTTTGCTTGAGAAGTTCGATTCAGTTTGATGAAAAGCCACTGTTTCCTTTGCATCCTGCAACTGATGAACACCATTCCTCATCAAAGCCTGCTGTTTTGGGAAACAAAAGAGGGTTCTCAGATGTCATGAGTGGATTCGCCGAGGAGAAATTGCTTGTTAGTTCCGAGGTCAACACAATATTGCCACCAAGGCCTTCTTCTAATGTGGGGTTGAAACCAAGCTCTATGCTTGAGAACGTCGGGGCTCAGCAGCAAGCCAAAGAACTCGCAACAGTGAAGGTTGGTCACGAGAGGTCTCATGCTGTCAACGAAAGCAGACCAAATCTTAATGATTCTACTAATAACAATAGCAGTGCACCAGCTACCAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGGTCATTTAGGAAGAATTCATTGGTCACTACTTCAAAGAATGTTGAAGAAGTAGATGGAAAAGTGGGGCCTGGTGCACTGTTTGTAAAGGTCAGTATGGATGGTGCACCTTACTTAAGAAAAGTAGACTTGAAGAATTACAATGCGTATGCCGACCTATCTTCTGCGCTGGAGAATATGTTCAGTTGTTTTACCATAGGTTCTTGTGGATCTCATGGAAATCTGGGAGGGGAGGTGCTGAATGAAACCAAGCTGAAGGATCTGCTTCATGGATCAGAATATGTTCTTACTTACGAGGATAAAGATGGAGACTGGATGCTAGTGGGTGATGTTCCCTGGGAGATGTTTACTGAGACGTGCAAGAGGCTAAGGATTATGAAGAGCTCTGAAGCCATTGGTCTAGCACCAAGAGCTGTTGAAAAAAGTAAGAGCAGGAACTAG 1101 0.4587 MSKPLLGIAEEEGQSNVTLLVSSSATMESVCLNSSKLKERNYMGLSDCSSVDSSAPSFSDETKSNLNLKATELRLGLPGSQSPERDSDLCLRSSIQFDEKPLFPLHPATDEHHSSSKPAVLGNKRGFSDVMSGFAEEKLLVSSEVNTILPPRPSSNVGLKPSSMLENVGAQQQAKELATVKVGHERSHAVNESRPNLNDSTNNNSSAPATKAQVVGWPPIRSFRKNSLVTTSKNVEEVDGKVGPGALFVKVSMDGAPYLRKVDLKNYNAYADLSSALENMFSCFTIGSCGSHGNLGGEVLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTETCKRLRIMKSSEAIGLAPRAVEKSKSRN* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1856 366 Gene3D - 242 360 - -
Gso2g1856 366 ProSiteProfiles PB1 domain profile. 246 348 IPR000270 GO:0005515
Gso2g1856 366 MobiDBLite consensus disorder prediction 193 211 - -
Gso2g1856 366 SUPERFAMILY CAD & PB1 domains 244 347 - -
Gso2g1856 366 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 23 360 IPR003311 GO:0005634|GO:0006355
Gso2g1856 366 MobiDBLite consensus disorder prediction 184 211 - -
Gso2g1856 366 Pfam AUX/IAA family 71 357 IPR033389 -
Gso2g1856 366 PANTHER AUXIN-INDUCED PROTEIN 23 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1856 Gso-Chr2 42704545 42709362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1856 249 357 B3 DNA Binding Superfamily AT1G59750 30.275 6.39e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gso2g1856 AUX_IAA 2.8e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1856 K14484 - gmx:100818881 715.301