Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1854 ATGGAGCTTCAAGACCATGATTTCTTGGAGGAATTAATGTCTCTAAGAAGAGAAACATGGGATACCAATCCATGTTCACAAGAAAACCAGCTTTTCTCTAATGGCTGGAGTTTTGATTGTTTTGAGGATCAAAACTATCATCAAGCTTTTCCTCCAAACTCTTTCTCTTGCCAACAAGTTCCTCAAAGTTACAATAACAAAGGCTACAACTACAATGAAATTTATAGTTCCTTACTACATGAATTCTCTGCACCCCAAGTTATAGATTCATCATCCTATAACACCCTTGATACCTCTCCTTTTCTGGCTCAAGAAGATTATCCATTGTCCATGATGGAAGAAGAAGATCCGGGCTTTCTTGGGGAAGAGCTTCATTGTTTGGACCTTCAAACCACATGCAAAATGGAGCCAAGCCATTCCACTGAAATGCCTATTTTCAACACAACTTCATCATTTGTGGAGAGAAAGAATAGAGCAAAGAAGCTTCAGGGGCAGCCTTCAAAGAACCTAATGGCAGAGAGGAGAAGAAGAAAGAGGTTAAATGACAGGCTCTCCATGCTAAGATCAATTGTGCCTAAGATAAGTAAGATGGACAGAACAGCTATACTTGGAGACACTATCGGTTATATGAAGGAGCTCTTGGAAAAGATTAAGAATTTGAAGCAAGAAATAGAAGTGGATTCAAACATGGCTGGCATTTTCAAGGATGTGAAGCCAAACGAAATCATAGTGAGAAATTCTCCAAAGTTTGATGTGGAGAGGAGAAATGTCAATACAAGGGTGGAGATCTGCTGTGCAGGGAAGCCAGGCTTGTTGCTGGCTACCGTAAACACCTTGGAAACATTAGGCGTCGAGATCCAACAATGCGTTATTAGCTGTTTCAATGATTTCACAGTGCAAGCTTCTTGCTCAGAGGAATTGCTGCAGAAGACAATTCTGAGTTCTGAAGATATAAAGCAAGCACTATTTAGAAGCGCAGGATATGGTGGACGATATTTGTGA 1002 0.4042 MELQDHDFLEELMSLRRETWDTNPCSQENQLFSNGWSFDCFEDQNYHQAFPPNSFSCQQVPQSYNNKGYNYNEIYSSLLHEFSAPQVIDSSSYNTLDTSPFLAQEDYPLSMMEEEDPGFLGEELHCLDLQTTCKMEPSHSTEMPIFNTTSSFVERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDTIGYMKELLEKIKNLKQEIEVDSNMAGIFKDVKPNEIIVRNSPKFDVERRNVNTRVEICCAGKPGLLLATVNTLETLGVEIQQCVISCFNDFTVQASCSEELLQKTILSSEDIKQALFRSAGYGGRYL* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1854 333 PANTHER DNA BINDING PROTEIN 3 333 - -
Gso2g1854 333 Coils Coil 210 230 - -
Gso2g1854 333 CDD ACT_UUR-ACR-like 259 322 - -
Gso2g1854 333 Pfam Helix-loop-helix DNA-binding domain 170 213 IPR011598 GO:0046983
Gso2g1854 333 Gene3D - 153 228 IPR036638 GO:0046983
Gso2g1854 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Gso2g1854 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 226 IPR036638 GO:0046983
Gso2g1854 333 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 333 - -
Gso2g1854 333 SMART finulus 170 219 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1854 Gso-Chr2 42654061 42656314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1854 144 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 59.596 2.80e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g1854 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1854 - - gmx:100818341 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1556 14 47301835 47304021 Gso2g1854 2 42654061 42656314 GST