Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1845 ATGGGGAGAGGTAAGATCGTGATAAGGAGGATCGACAATTCCACGAGCAGGCAAGTGACGTTCTCGAAGCGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTCGGAGTTATGATCTTCTCCAGCACCGGAAAACTCTACGATTTCGCCAGCTCCAGCATGAAATCAGTAATGGACCGATACAGCAAATCAAAAGAAGAACCTTGTCAACTTGGGAGTTCAGCCTCTGAAATTAAGGTAGTTTGGCTCTACTCGAAGGTGGAAGTTCAACCAACAACTAAGGAGGGGTTTGTTTCAAGTCGTGTTTCTTTCATTCCCAAGAATATGAGGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGTCACCGCAGGAAAATGATGGGGGAAGAACTGTCAGGCTTGACAGTCAAAGAATTACAAAATTTGGAGAACCAATTAGAAATTAGCCTTCATGGTGTCCGAATGAAAAAGGATCAACTTTTAATGGGTGAAATACAAGAGCTAAATCGAAAGGGAAACCTCATACACCAAGAAAATGTGGAACTGTATAAGAAGGTAAACCTAATTTGTCAAGAAAACATGGAATTGAAAAAGAAGGTCTATGGAACACAAGATGATAACGAAACAAACAGAGATTCTGTTCTGACAAATGGTCTAGGCATAGGAGAGGATTTGCAAGTGCCTGTGAATCTCCAGCTAAGCCAGCCACAGCAACAGCAACAACACTACAAGGCATCTTCAGGAACTACAAAATTGGGGTTGCCAAGAAGATTTTTACTGGGATTTGTAGGTTTGCCAAGGAGTTCTCTCATATTTTGGTAG 870 0.4241 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSSMKSVMDRYSKSKEEPCQLGSSASEIKVVWLYSKVEVQPTTKEGFVSSRVSFIPKNMRFWQREAAMLRQQLHNLQESHRRKMMGEELSGLTVKELQNLENQLEISLHGVRMKKDQLLMGEIQELNRKGNLIHQENVELYKKVNLICQENMELKKKVYGTQDDNETNRDSVLTNGLGIGEDLQVPVNLQLSQPQQQQQHYKASSGTTKLGLPRRFLLGFVGLPRSSLIFW* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1845 289 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Gso2g1845 289 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Gso2g1845 289 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso2g1845 289 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 88 - -
Gso2g1845 289 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 115 267 - -
Gso2g1845 289 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso2g1845 289 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Gso2g1845 289 ProSiteProfiles K-box domain profile. 117 208 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso2g1845 289 PANTHER SERUM RESPONSE FACTOR HOMOLOG 115 267 - -
Gso2g1845 289 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 88 - -
Gso2g1845 289 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso2g1845 289 Pfam K-box region 118 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso2g1845 289 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso2g1845 289 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso2g1845 289 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso2g1845 289 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso2g1845 289 Coils Coil 117 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1845 Gso-Chr2 42511204 42537604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1845 1 265 MADS-box Gene Family AT2G22630 53.137 4.16e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso2g1845 K-box 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1845 K09264 - gmx:100778970 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1551 14 47155391 47175475 Gso2g1845 2 42511204 42537604 GST