Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1827 ATGAAAAAGACAAGTAATGTTTTCTTCAGTGAGGATGAAGCTGCTGTTCTATTGCAAAGGTACAACGCACAAACAATTTTGACGTTGCTTCAGGAATTGGCCAATTATCCAGACTCGAAGTTCGACTGGGATGATTTGGTGGCCAAAACCTCAACTGGAATTTCCAATGCCAGAGAGTATCAGATGCTGTGGCGTCATCTAGCGTATGGTCACTCCTTTGATGAAAATTCGGACCTCGATAATCAACCTCTGGATGATGATAGTGACTTAGAATGTGAACGAGAAGCATTGCCTCGCCCAAACAAGGAAATTGCAGCAGAAGCTTCAGCATGTGTGCAGGTAATGATGACATCTTTTAAGCTGAATGAGTCCACCCCTACAAGCTCAGTGATTCAGGCTCCATTGACAATAAATGTTCCAGTCTTTCGTTCATCTAGAATTGCTAATATGGAAAGTTCACAGTCATCTAGTTCGGGGATGCAAGAGACAAACATTGTTTTTCCAGTTACCGTTAAGAGACAAGCACTGCCAAATGTACCCTCAACGAGAGCTGTGGAAACCAGAGGATCAGGTAGTGGCTACACATCCATGAAAAAGAAAAGAGAACCATGGTCTGAGGAAGAGGACTTGCAACTAAGAGCTGCTGTTCGGAGGTGGGGTGAAGGTAATTGGGCAACCATGGCTAAAAGTGATGACTTTCCTATTCAGAGAAGTACCACGCAGTTGTCCAAGAGGTGGAGCACATTGCGAAAGAAAGAGTGA 762 0.4396 MKKTSNVFFSEDEAAVLLQRYNAQTILTLLQELANYPDSKFDWDDLVAKTSTGISNAREYQMLWRHLAYGHSFDENSDLDNQPLDDDSDLECEREALPRPNKEIAAEASACVQVMMTSFKLNESTPTSSVIQAPLTINVPVFRSSRIANMESSQSSSSGMQETNIVFPVTVKRQALPNVPSTRAVETRGSGSGYTSMKKKREPWSEEEDLQLRAAVRRWGEGNWATMAKSDDFPIQRSTTQLSKRWSTLRKKE* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1827 253 CDD SANT_TRF 203 251 - -
Gso2g1827 253 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 253 - -
Gso2g1827 253 MobiDBLite consensus disorder prediction 179 209 - -
Gso2g1827 253 Gene3D - 194 253 - -
Gso2g1827 253 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 253 - -
Gso2g1827 253 Pfam Myb-like DNA-binding domain 201 249 IPR001005 -
Gso2g1827 253 ProSiteProfiles Myb-like domain profile. 196 250 IPR001005 -
Gso2g1827 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 253 IPR017930 -
Gso2g1827 253 SUPERFAMILY Homeodomain-like 198 250 IPR009057 -
Gso2g1827 253 SMART sant 200 252 IPR001005 -
Gso2g1827 253 MobiDBLite consensus disorder prediction 179 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1827 Gso-Chr2 42205025 42209702 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso2g1827 Myb_DNA-binding 3.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1827 - - gmx:100819057 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1827 2 42205025 42209702 Gso4g0811 4 8408759 8418808 PCT
Gso2g1827 2 42205025 42209702 Gso6g0817 6 7706628 7715597 PCT