Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1820 ATGCTTCCGTTTCGGAGATTCTATGGGTTCGAGAGCTGGCTAGACCACGACGCTGGCCATGCTCAGAGTTCGCTGATCAAAAAGGCGGTGGAGTTGGACGGCGCCAGATCGAAAACGGAGCGGAAATCAACGGAAGCGTGCAAGAGTCACAGGGAAGCTGAGAGGAGACGCAGGCAGAGAATCAACTCTCACCTCTCCACCTTACGTACCCTCCTTCCTAACGCCGCCAAGTCGGACAAGGCGTCGTTGCTGGGGGAAGTGGTGGAGCACGTGAAGCGGCTGAGGAAGCAAGCCGATGACGTGACGTGCGGGGACTCGTACTCCTCGCGCAGCGGCGAACCGGGTTCGGTCCGGTCGGAGGCATGGCCGTTTCCGGGGGAGTGCGATGAGGTGACGGTGAGTTACTGTGACGGCGAGGACGGGGAACCGAAGCGGGTGAAGGCGACGGTGTGCTGCGGGGACCGGACCGGTCTGAACCGGGACGTGTCCCAAGCGATCCGGTCGGTTCGGGCCAAAGCGGTTCGCGCGGAGATGATGACGGTTGGGGGAAGGACGAAGAGTGTTGTGGTGGTGGAGTGGGAAAAGGAAGAAGAGGAGGTTGGGGCGCTGGAACGGGCTTTGAAGGCTGTGGTGGAGAATCGGGCTTTGGTGGGCTTTGGAATGGGCCCAGTCATTCTGGGCCAGAAACGGGGTAGGGATTGCTGTGCTTCGCCTAGTAGTGAGGTTGACTCTGACTTCTTGCTGAGGAATGGGAGCTTTTGCTAA 765 0.6 MLPFRRFYGFESWLDHDAGHAQSSLIKKAVELDGARSKTERKSTEACKSHREAERRRRQRINSHLSTLRTLLPNAAKSDKASLLGEVVEHVKRLRKQADDVTCGDSYSSRSGEPGSVRSEAWPFPGECDEVTVSYCDGEDGEPKRVKATVCCGDRTGLNRDVSQAIRSVRAKAVRAEMMTVGGRTKSVVVVEWEKEEEEVGALERALKAVVENRALVGFGMGPVILGQKRGRDCCASPSSEVDSDFLLRNGSFC* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1820 254 PANTHER OS09G0463900 PROTEIN 22 232 - -
Gso2g1820 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 102 IPR036638 GO:0046983
Gso2g1820 254 Pfam Helix-loop-helix DNA-binding domain 47 94 IPR011598 GO:0046983
Gso2g1820 254 PANTHER TRANSCRIPTION FACTOR BHLH30 22 232 IPR045847 GO:0003700|GO:0006355
Gso2g1820 254 MobiDBLite consensus disorder prediction 102 121 - -
Gso2g1820 254 Gene3D - 38 102 IPR036638 GO:0046983
Gso2g1820 254 MobiDBLite consensus disorder prediction 36 60 - -
Gso2g1820 254 SUPERFAMILY ACT-like 146 212 IPR045865 -
Gso2g1820 254 Gene3D - 143 216 - -
Gso2g1820 254 SMART finulus 51 100 IPR011598 GO:0046983
Gso2g1820 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1820 Gso-Chr2 42107463 42108960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1820 34 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 37.681 9.90e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g1820 HLH 6.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1820 - - gmx:100816394 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1534 14 46842203 46843525 Gso2g1820 2 42107463 42108960 GST