Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1805 ATGGAATTCGACGAGCAAGAGGAGCATGAGGAGGAGGAGGAAATGGGGATACCGGAGCCGGCGGTGGCGGTGGCGGCGCCGCAGACTTTTGACTCGCGGTCGAAAATCGGCGGCGGCGAGGCGCGGAAGAGCGCGTTCGGCGTGGCGGCGGTGCGGTACCGAGAATGCCAGAAGAACCACGCCGTCAGCTTCGGCGGCCACGCCGTTGACGGCTGCTGCGAGTTCATGGCCGCCGGAGACGACGGCATGCTGGAAGGCGTCATCTGCGCCGCATGCAACTGCCACCGGAATTTCCACCGCAAGGAGATCGACGGCGAGATGTCCTCCTTCCACCACCGCGCGCAACCTCCACCGCCGCCGTTGCACCACCACCACCAATTCTCCCCGTACTACCACCACCGCGTCCCGCAGCACCCCACCGCCGCCGGCTACATCCACCACCACCTCACACCTCCGATGTCGCAGCACCGCCCGCTCGCCCTCCCGGCCGCCGCATCCGGCGGCGGCCTCAGCCGCGAAGAAGAAGACATGTCAAACCCTAGCAGCAGCGGCGGCGGAGGTGGCGGTGGCGGCGGTGGATCCAAAAAACGGTTCCGAACTAAGTTCACGCAAGAACAAAAAGATAAGATGCTCGCATTCGCAGAACAACTAGGGTGGAGAATCCAGAAACACGATGAATCTGCTGTGGAACAGTTCTGTGCTGAGATCAATGTGAAGCGAAACGTTCTCAAAGTTTGGATGCACAATAACAAGAGCACTCTCGGCTGA 768 0.6211 MEFDEQEEHEEEEEMGIPEPAVAVAAPQTFDSRSKIGGGEARKSAFGVAAVRYRECQKNHAVSFGGHAVDGCCEFMAAGDDGMLEGVICAACNCHRNFHRKEIDGEMSSFHHRAQPPPPPLHHHHQFSPYYHHRVPQHPTAAGYIHHHLTPPMSQHRPLALPAAASGGGLSREEEDMSNPSSSGGGGGGGGGGSKKRFRTKFTQEQKDKMLAFAEQLGWRIQKHDESAVEQFCAEINVKRNVLKVWMHNNKSTLG* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1805 255 Gene3D - 180 254 - -
Gso2g1805 255 Pfam ZF-HD protein dimerisation region 51 103 IPR006456 -
Gso2g1805 255 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 52 103 IPR006456 -
Gso2g1805 255 SUPERFAMILY Homeodomain-like 181 253 IPR009057 -
Gso2g1805 255 MobiDBLite consensus disorder prediction 1 27 - -
Gso2g1805 255 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 254 - -
Gso2g1805 255 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 195 251 IPR006455 -
Gso2g1805 255 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 53 102 IPR006456 -
Gso2g1805 255 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 38 254 - -
Gso2g1805 255 MobiDBLite consensus disorder prediction 1 17 - -
Gso2g1805 255 MobiDBLite consensus disorder prediction 155 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1805 Gso-Chr2 41848502 41850651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1805 49 254 ZF-HD Transcription Factor Family AT4G24660 54.854 2.05e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso2g1805 ZF-HD_dimer 2.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1805 - - gmx:100811041 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1515 14 46556961 46558272 Gso2g1805 2 41848502 41850651 GST
Gso2g1805 2 41848502 41850651 Gso4g0794 4 8193056 8194871 PCT
Gso2g1805 2 41848502 41850651 Gso6g0799 6 7560235 7561439 PCT
Gso4g0794 4 8193056 8194871 Gso2g1805 2 41848502 41850651 PCT
Gso6g0799 6 7560235 7561439 Gso2g1805 2 41848502 41850651 PCT