Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1800 ATGAAAATGAAAAAGAAACGAAAGGAAAGCGAGGCCAGTGGACGGTCGAACTTGCCGGATGAGATTTCGAAGTCGCATTACTCCCTTGAGCGGCGTTCGCGGTTGATCAAACGGTGCAGGGAAGACGGCGTCGTGGCGACGGTGCCGCCGTCACGCGGCGCGTCGTTATTCCTAACGCCGTCGCGGGGCTTGAAGCGGAAGATAGGTTGCATCGACAAGGCCACGCAGATGGGGCGCAGCGTGAGGATCGAGGACGACTACGTGACCGGGGGCAGCGCGATCGGGCAGGGGAAGTTCGGGTCGGTGACGGTGTGCCGCGCACGTGCGAACGGCGCGGAGCACGCGTGCAAGACGCTGAGGAAGGGGGAGGAGACGGTGCACCGCGAGGTGGAGATAATGCAGCACCTGTCGGGGCACCCTGGGGTGGTGACGCTGGAGGCGGTGTATGAGGATGAGGAGTGTTGGCATCTTGTGATGGAGTTGTGTTCTGGAGGGAGGTTGGTTGATAGGATGAAGGAGGGGCCGTGTTCGGAACACGTGGCGGCGGGGATACTGAAGGAGGTGATGTTGGTGGTTAAGTATTGCCATGATATGGGTGTCGTGCATAGAGATATTAAGCCTGAGAATATCTTGCTCACCGCGGCCGGGAAGATCAAGCTTGCGGATTTCGGGCTCGCCATCAGGATTTCTGAGGGTCAGAATTTGACAGGTGTGGCTGGGAGCCCTGCATATGTTGCGCCAGAAGTGTTGTTGGGTAGATATTCTGAGAAGGTGGATATATGGAGTTCTGGGGTGCTCCTGCATGCTTTGTTGGTTGGTGGTCTTCCATTTAAAGGAGATTCACCGGAAGCAGTTTTTGAGGAAATTAAGAATGTCAAACTAGATTTTCAAACAGGGGTGTGGGAATCAATATCTAAACCTGCACGAGATCTTGTTGGGAGAATGCTGACAAGGGATGTTTCAGCAAGGATAACAGCTGATGAAGTACTAAGGCATCCATGGATATTGTTCTATACTGAACGCACATTAAAGATGCTGCCTGTTAAATCAAAATTGAAACTCCAAAATGCAGCTGCTTGCCAAAATGAATCTGGGTTAGTAGGAGGAAACAAGATAGTTGATGATGGCTCCCTTGATGAGGATTATTCAAGCCCGTTTTCATCCTCTGAGAGTTGCAATTCAGAGTATCATGAGGACTGTGCGTGGATTGATGCACTTTCCACTGCAGTTTCACGTGTGAGGATATCCGAAACAAAGAGGACCAAGTTGTGGGGTTCTACTAGTCCACTTGATCAACAAGGTTCATCTAACATGAAGACTAACCTCTGTAAAGCATTCTGA 1341 0.5145 MKMKKKRKESEASGRSNLPDEISKSHYSLERRSRLIKRCREDGVVATVPPSRGASLFLTPSRGLKRKIGCIDKATQMGRSVRIEDDYVTGGSAIGQGKFGSVTVCRARANGAEHACKTLRKGEETVHREVEIMQHLSGHPGVVTLEAVYEDEECWHLVMELCSGGRLVDRMKEGPCSEHVAAGILKEVMLVVKYCHDMGVVHRDIKPENILLTAAGKIKLADFGLAIRISEGQNLTGVAGSPAYVAPEVLLGRYSEKVDIWSSGVLLHALLVGGLPFKGDSPEAVFEEIKNVKLDFQTGVWESISKPARDLVGRMLTRDVSARITADEVLRHPWILFYTERTLKMLPVKSKLKLQNAAACQNESGLVGGNKIVDDGSLDEDYSSPFSSSESCNSEYHEDCAWIDALSTAVSRVRISETKRTKLWGSTSPLDQQGSSNMKTNLCKAF* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1800 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Gso2g1800 446 MobiDBLite consensus disorder prediction 1 15 - -
Gso2g1800 446 Gene3D Phosphorylase Kinase; domain 1 91 167 - -
Gso2g1800 446 Gene3D Transferase(Phosphotransferase) domain 1 168 366 - -
Gso2g1800 446 Pfam Protein kinase domain 92 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1800 446 ProSiteProfiles Protein kinase domain profile. 88 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1800 446 SMART serkin_6 88 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1800 446 PANTHER SERINE/THREONINE-PROTEIN KINASE 19 438 - -
Gso2g1800 446 SUPERFAMILY Protein kinase-like (PK-like) 85 359 IPR011009 -
Gso2g1800 446 CDD STKc_CAMK 91 334 - -
Gso2g1800 446 PANTHER SERINE/THREONINE-PROTEIN KINASE PEPKR2 19 438 - -
Gso2g1800 446 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1800 Gso-Chr2 41792095 41795353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1800 5 335 EF-hand Containing Proteins AT4G04720 39.181 4.19e-75 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso2g1800 Pkinase 8.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1800 - - gmx:100809977 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1509 14 46417634 46420944 Gso2g1800 2 41792095 41795353 GST
Gso2g1800 2 41792095 41795353 Gso4g0825 4 8744417 8747692 PCT
Gso2g1800 2 41792095 41795353 Gso6g0832 6 7922461 7927045 PCT
Gso4g0825 4 8744417 8747692 Gso2g1800 2 41792095 41795353 PCT
Gso6g0832 6 7922461 7927045 Gso2g1800 2 41792095 41795353 PCT