Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1795 ATGGGCATCCACACGGATTGCCGTGCACCACTGTTGATGAATTTGGATCATGATCATGTTTGTTTTCTTCTTCTTATTCTTCTCGTGCCGTCCATCACGGCTCAGTTACAAAACTCGCCGCCACCGCCACCGCCATCGTCGGATCCTTTCACGAGGTTAAGGTTCGACAAGACCATGGCTGCGGTTTTGGTCATCCTGGTAGTTGTTTTTTTTGCATTGGGATTTGTTTCTATATACACGCGCCAATGCGCGGAGCGGAGGATCAGAGGGAGGCTCGACCTCGCCGTGGAGATCGCCGCCGGGATGGAGCGCCGGCAGCCCCGCGGCCTCGACGCGGCGGTGGTGGACACGTTCCCGACCTTCGTGTACTCCGAGGTTAAGGCGCTGAAGATCGGAAGGGTGACGACGCTGGAATGCGCCGTGTGCCTCAACGAGTTCCTCGATGACGAAACGCTGCGTTTGATTCCCAAGTGCTGCCACGTGTTCCACCCCGATTGCATCGACGCGTGGCTGGTGAACCACTCTACTTGTCCCGTTTGCCGCGCCAACCTCGCTCCAAAGCCCGAGGACGCGCCTTCTTCTGTTGAGATTCATGTTCCAGATCCGGCCCGGCCCATTGGGCCCAATGACATCAACCGGGTGGAAGAAGAGCATGAAGGTGAACAAAACAGAATTGTTACGGAGCCGCCACGTGTTTTAGATGATCTTAACCGGGCTCGACCGGTTCGGTCTAAATCGACCGGGATTGGAAATGCGAGACTGTTTCCGCGATCTCTCTCGACGGGTCACTCGCTGGTTCGACCGGGTGATGATTGCGAGCGGTTCACACTGCGGTTACCGGAGGAGGTGAAGGACCGGCTCGTGAGATCGGCGACGCTGAACCGGACGAAGAGTTGTGGGGTGACGTGGCAGCGGCAGAGCAGTGGGAGGAGGGGTTACCGGACGAGGAGTGTGGGGCGGTACGAGCGGTTCGGTGGGGAGGGCCGGTTGGACCGGTGGGGGTTCATGTGGACCCCACCGTTTTGGGGTAGGACTGGTTCGGTGAAGTCACCTAAGCCTACGAGGGTGAAGGATGAAGTTGACGTGGGAGAACGTTCCTCTGATCGTTTGTTTTCCAAGGATTGA 1125 0.5769 MGIHTDCRAPLLMNLDHDHVCFLLLILLVPSITAQLQNSPPPPPPSSDPFTRLRFDKTMAAVLVILVVVFFALGFVSIYTRQCAERRIRGRLDLAVEIAAGMERRQPRGLDAAVVDTFPTFVYSEVKALKIGRVTTLECAVCLNEFLDDETLRLIPKCCHVFHPDCIDAWLVNHSTCPVCRANLAPKPEDAPSSVEIHVPDPARPIGPNDINRVEEEHEGEQNRIVTEPPRVLDDLNRARPVRSKSTGIGNARLFPRSLSTGHSLVRPGDDCERFTLRLPEEVKDRLVRSATLNRTKSCGVTWQRQSSGRRGYRTRSVGRYERFGGEGRLDRWGFMWTPPFWGRTGSVKSPKPTRVKDEVDVGERSSDRLFSKD* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1795 374 Pfam Ring finger domain 138 181 IPR001841 -
Gso2g1795 374 MobiDBLite consensus disorder prediction 347 374 - -
Gso2g1795 374 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Gso2g1795 374 CDD RING-H2_PA-TM-RING 138 181 - -
Gso2g1795 374 SUPERFAMILY RING/U-box 126 191 - -
Gso2g1795 374 SMART ring_2 139 180 IPR001841 -
Gso2g1795 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 187 IPR013083 -
Gso2g1795 374 PANTHER RING-H2 FINGER PROTEIN ATL11 21 307 - -
Gso2g1795 374 PANTHER RING FINGER DOMAIN-CONTAINING 21 307 - -
Gso2g1795 374 MobiDBLite consensus disorder prediction 351 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1795 Gso-Chr2 41717415 41719315 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1795 18 365 Rapid Response to Elicitors AT3G05200 40.633 2.35e-67 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1795 K10664 - gmx:100807828 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1501 14 46296833 46298570 Gso2g1795 2 41717415 41719315 GST
Gso2g1795 2 41717415 41719315 Gso4g1907 4 49282378 49284858 PCT
Gso2g1795 2 41717415 41719315 Gso6g0837 6 7968626 7970400 PCT
Gso4g1907 4 49282378 49284858 Gso2g1795 2 41717415 41719315 PCT
Gso6g0837 6 7968626 7970400 Gso2g1795 2 41717415 41719315 PCT