Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1793 ATGGCCCTAGAGGCCGTGGTTTTCCCACAAGATCCATTCACTTACGGTTGCAACAACAAAGACTTCTTGTACTCGTTAGTAGGAGGTGATGGTGGTGGTGGAGGAGGAAGCCACGAGTACGGTTTCCAAGCATCATCAGAAGACAAACCCCATGTGGGAATCATTATCAACAACAACAACATAGACCACACCCTGCATGCAAATTGGGATTCATCTTCTCCTTCGGTGTTGCAAAGTGTCAAAGAACAATGGGATTCACACTCCTCCCCTGAAGCTTGCACTGTTGATCAATCCCTCCCCAGAGCCTTCCCTCTTCCTCCTTCTTCTTCATCCCCCGAAGCCGCCGCCACCGGCCGCCGCAAACGACGTCGTACCAAGAGCGCTAAGAACAAGGAGGAGATCGAGAACCAGAGGATGACCCACATTGCAGTTGAGCGCAATAGAAGGAAGCAGATGAACGAGTACCTTGCCGTGCTTAGATCCTTGATGCCTCCTTCTTATGTACAAAGGGGTGATCAAGCCTCTATTATTGGTGGCACCATTAACTTCGTGAAGGAGCTGGAGCAGCTTCTGCAGTGCATGAAGGGCCAGAAGAAGAGAACAAAGGAGGGTAGTGGCTTCTCTGACTCATCACCCTTTTCTGAGTTCTTCATGTTCCCCCAGTACTCGACACGTGCCACACAGAGCAGCAGCAGCAGCAGCAGCAAAGGCTACCCTGGCACGTGCGAGGCCAATAACAACATGGCACGGAACCCTTCATCATGGGCCGTGGCGGACATAGAAGTGACCTTGGTGGATGGCCATGCCAACATGAAGATACTCTGCAAGAAACGACCAGGGATGCTTTTGAAGATGGTTGTTGGTCTTTTAAGTCTTGGTCTCAGCATTCTCCACCTTAATGTTACCACTGTTGACGATATGGTCCTTACCTCAGTTAGTGTTAAGGTAGAGGAAGGGTGTCAGCTGAACACGGTGGATGAAATTGCAGCTGCTGTGCATCAATTATCACGCACGGTTCAGGAGGAAGCTGTGTTCAGCTGA 1041 0.5043 MALEAVVFPQDPFTYGCNNKDFLYSLVGGDGGGGGGSHEYGFQASSEDKPHVGIIINNNNIDHTLHANWDSSSPSVLQSVKEQWDSHSSPEACTVDQSLPRAFPLPPSSSSPEAAATGRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGTINFVKELEQLLQCMKGQKKRTKEGSGFSDSSPFSEFFMFPQYSTRATQSSSSSSSKGYPGTCEANNNMARNPSSWAVADIEVTLVDGHANMKILCKKRPGMLLKMVVGLLSLGLSILHLNVTTVDDMVLTSVSVKVEEGCQLNTVDEIAAAVHQLSRTVQEEAVFS* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1793 346 CDD bHLH_AtFAMA_like 139 212 - -
Gso2g1793 346 Gene3D - 125 203 IPR036638 GO:0046983
Gso2g1793 346 PANTHER MAX DIMERIZATION, MAD 1 345 - -
Gso2g1793 346 SMART finulus 142 193 IPR011598 GO:0046983
Gso2g1793 346 Coils Coil 184 204 - -
Gso2g1793 346 MobiDBLite consensus disorder prediction 99 133 - -
Gso2g1793 346 Pfam Helix-loop-helix DNA-binding domain 137 188 IPR011598 GO:0046983
Gso2g1793 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 187 IPR011598 GO:0046983
Gso2g1793 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 203 IPR036638 GO:0046983
Gso2g1793 346 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1793 Gso-Chr2 41678557 41682083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1793 1 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.647 3.19e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g1793 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1793 - - gmx:100803240 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1497 14 46203850 46207543 Gso2g1793 2 41678557 41682083 GST
Gso2g1793 2 41678557 41682083 Gso4g0837 4 8878624 8880597 PCT
Gso2g1793 2 41678557 41682083 Gso6g0838 6 7986526 7988498 PCT
Gso4g0837 4 8878624 8880597 Gso2g1793 2 41678557 41682083 PCT
Gso6g0838 6 7986526 7988498 Gso2g1793 2 41678557 41682083 PCT