Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1792 ATGGCTAGCAAACACAGAAAACTCTTCCCTGATGAAACAACAACAACCACAAACCAAACCCAAGATTGCTATGGCTTTTGTGACCCTGCATGCCCTTACAATTGTTACAATAACCCTGATTACTTCTTCTCTCCACCACCACCTTCTATTTCACATTCAAGCCAAGTTAATCACATATCCTCCTACTTGATCATTCTTGTTACTCTATTCACGGTCATTTTTGTTGTGGTTGGTTTCTACGTGATCAAAGTGAAGTGCTATGCTGCATGGTGCGGGTGGAGATTCAACAACGGTTCCGTTCCCTCTCAATCAGACACTGCTGAGGAGTTTCTCAATGAGAACCAAGTTGATCACCCCGTGTGGCTCATTGCCACTGTGGGGTTGCAACAATCGATCATCAACTCCATCACGGTTTGCAAGTACAAGAAGAATGAAAGGTTGGTTGAAGGAACCGAGTGTTCGGTGTGTTTGAACGAGTTTCAGGAAGAAGAGACTTTAAGACTCTTGCCAAAGTGCAACCATGCTTTTCATGTTCCTTGTATTGACACTTGGTTGAGATCACACACAAATTGTCCTCTTTGTCGGGCTGGTATTGTTTCTAGTAGTGTCAACTCTGAAGCACAAGCACCTGTGTCGAATTCGGAGCAAGAAAATGCAAATTTGGAGAGGAATCAAGATACCCTTTTGGAGAATTCAAGGAATAATGAATGTGATTTAAGCAGCAACATGGTTGCAGGGGAATCAAGTGAAGCACTTGATGAATCAAATTCTAAGGATAGGGTAAATGATCAAACTCAGAACGATGTGGTTCTGAATATCGAGATTCTAACAGAGACGGGATCTGTTTCAACTACAGAATCTGAAAGTGAAAGCCATCGTGTTGTTGATGATCACAAACAACATGATGACACAATGTTGAACACGGTTGATCAACGGAAGCAAGAGCAAGATGGTGAGTACTACTGCTCAAAAACGTGTAAAGCAATGCGTCGTTCATCTATTGAAGAGTGTTTGCATTTAAACCCGGTATCTATGAAAAGGTCGTTCTCCTCCTGCAATGGAAGGATTCTAACTTCGAGAGTTTATATGAGTCTAAACTCTAAACTCAATTCATCCCTATTAGAGTTTTCATTTTATGAAAGATGA 1146 0.4127 MASKHRKLFPDETTTTTNQTQDCYGFCDPACPYNCYNNPDYFFSPPPPSISHSSQVNHISSYLIILVTLFTVIFVVVGFYVIKVKCYAAWCGWRFNNGSVPSQSDTAEEFLNENQVDHPVWLIATVGLQQSIINSITVCKYKKNERLVEGTECSVCLNEFQEEETLRLLPKCNHAFHVPCIDTWLRSHTNCPLCRAGIVSSSVNSEAQAPVSNSEQENANLERNQDTLLENSRNNECDLSSNMVAGESSEALDESNSKDRVNDQTQNDVVLNIEILTETGSVSTTESESESHRVVDDHKQHDDTMLNTVDQRKQEQDGEYYCSKTCKAMRRSSIEECLHLNPVSMKRSFSSCNGRILTSRVYMSLNSKLNSSLLEFSFYER* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1792 381 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Gso2g1792 381 SMART ring_2 153 194 IPR001841 -
Gso2g1792 381 CDD RING-H2_PA-TM-RING 152 195 - -
Gso2g1792 381 Pfam Ring finger domain 152 195 IPR001841 -
Gso2g1792 381 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 360 IPR044675 -
Gso2g1792 381 Coils Coil 211 231 - -
Gso2g1792 381 SUPERFAMILY RING/U-box 142 200 - -
Gso2g1792 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Gso2g1792 381 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1792 Gso-Chr2 41668276 41669888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1792 4 261 C3H Transcription Factor Family AT1G72220 42.904 4.22e-66 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1792 - - gmx:100805705 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1496 14 46194193 46196062 Gso2g1792 2 41668276 41669888 GST