Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso2g1745 | ATGGAATTCAAATATCGTGCCGTCCAAGATCGAAGGACACCGCCGCCGCCGCCGCCGCCGCACCCTCTTTCCACCGGCACCTACGTCTTCGACAGCCCATTACGAGGGTATGAGTTTTCATCAGGTGGTTATCCCAGCAATGTTTCGGCGCCTAGAGTTTTCCTAACTCCGGTGCCAGTCAATGTTGGAGAAGCGTTCCGGCGAGAATTGGAGAAAAAGCAAATACTGCGGGAGCTGGAGAAGGAAGAAATTAGGAGAGAGATACTTGCCCGCGAGATGGCACAACGGCGAGAACTGGAGGAGGAAGTCATGAGGGAAATAACAGTCGAGAGAGTACTTGGAATCTCATTTCGAGAACAAGTTTCGATGTCTTTGAATCAGAATCATAGAATGAACAAGCCGATCAATAACAACATATTTGGTGGTTCACAACCTCGACTTCCCCCTCAAATTGATATCAAACAGAGTAACAAAGATAAAGCTAAGCCAGATGTTGATCCTTATGGTGCAAAACGCAAAGCAGGGAAACCTCCTACAATTGATGACAATCATCATTCTGGATTTAGTGTGGAGAAGAAACCTAAGCGGGAGTGGAGTTGTGGATTATGTCAAATTACTACCACAAATGAGAAAGGGTTGAATAATCATCTTGAGGGAAAGAAGCACAAGGCAAAAGCATCACTGAGAACTAAAAAGATAGGGTTGGATGCAAGACTAGATGGTCAAAAACTTCAACGTGGCATAACCTCCACAAACATAGGCATACTGGAACCTAGAAAGGAGGATCAAGTTGTGCAAAACAGTCAAGGTTTAGGTGGTCTGGATAATGAAAATGAAATAGCTACTAGCAAAGAAACAGGTGAAACAAATGCATTGACAAAAAGGAAGAAGTTTAAATTTTACTGTGCATTTTGTAAAGTTCAAACTGCCTCAGAAATTATCATGCAAAGCCATAAAAATGGAAAAAGGCATCTGGCTATGATCAAGAAATTTAGCCAAAACAATGTTGTTGCAAATTTTTATTGA | 1026 | 0.425 | MEFKYRAVQDRRTPPPPPPPHPLSTGTYVFDSPLRGYEFSSGGYPSNVSAPRVFLTPVPVNVGEAFRRELEKKQILRELEKEEIRREILAREMAQRRELEEEVMREITVERVLGISFREQVSMSLNQNHRMNKPINNNIFGGSQPRLPPQIDIKQSNKDKAKPDVDPYGAKRKAGKPPTIDDNHHSGFSVEKKPKREWSCGLCQITTTNEKGLNNHLEGKKHKAKASLRTKKIGLDARLDGQKLQRGITSTNIGILEPRKEDQVVQNSQGLGGLDNENEIATSKETGETNALTKRKKFKFYCAFCKVQTASEIIMQSHKNGKRHLAMIKKFSQNNVVANFY* | 342 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso2g1745 | 341 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Gso2g1745 | 341 | PANTHER | OS06G0651300 PROTEIN-RELATED | 1 | 333 | - | - | |
| Gso2g1745 | 341 | SUPERFAMILY | beta-beta-alpha zinc fingers | 173 | 227 | IPR036236 | - | |
| Gso2g1745 | 341 | Gene3D | Classic Zinc Finger | 279 | 332 | - | - | |
| Gso2g1745 | 341 | Gene3D | Classic Zinc Finger | 181 | 230 | - | - | |
| Gso2g1745 | 341 | MobiDBLite | consensus disorder prediction | 153 | 192 | - | - | |
| Gso2g1745 | 341 | SMART | c2h2final6 | 198 | 222 | IPR013087 | - | |
| Gso2g1745 | 341 | SMART | c2h2final6 | 300 | 324 | IPR013087 | - | |
| Gso2g1745 | 341 | Coils | Coil | 72 | 92 | - | - | |
| Gso2g1745 | 341 | Pfam | Zinc-finger of C2H2 type | 300 | 324 | - | - | |
| Gso2g1745 | 341 | Pfam | Zinc-finger of C2H2 type | 198 | 222 | - | - | |
| Gso2g1745 | 341 | SMART | ZnF_U1_5 | 297 | 331 | IPR003604 | GO:0003676|GO:0008270 | |
| Gso2g1745 | 341 | SMART | ZnF_U1_5 | 195 | 229 | IPR003604 | GO:0003676|GO:0008270 | |
| Gso2g1745 | 341 | MobiDBLite | consensus disorder prediction | 139 | 192 | - | - | |
| Gso2g1745 | 341 | PANTHER | OS06G0651300 PROTEIN | 1 | 333 | - | - | |
| Gso2g1745 | 341 | SUPERFAMILY | beta-beta-alpha zinc fingers | 295 | 331 | IPR036236 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso2g1745 | Gso-Chr2 | 41137733 | 41140722 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso2g1745 | 200 | 330 | C2H2 Transcription Factor Family | AT5G61190 | 29.323 | 6.96e-06 | 46.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso2g1745 | - | - | gmx:100786802 | 633.254 |