Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1704 ATGTCGACAAACCACTACACCATGGACCTTCCCGAACCAACACTCTGGTGGCCACACCCACACCAACAACAACTAACCTTAATAGATCCAGACCCTCTCCCTCTGAACCTCAACAACGACGACAACGACAATGGCGACGACAACGACAACGACGAAAACCAAACAGTTACAACAACCACAACAGGAGGAGAAGAAGAAATAATAAACAATAAAGAACCGATGTTCGAGAAGCCGCTAACCCCGAGCGACGTGGGGAAGCTGAACCGCCTCGTAATCCCGAAGCAGCACGCTGAGAAGTACTTTCCACTGAGTGGTGGTGACTCGGGCAGTAGCGAGTGCAAGGGGCTGTTACTGAGTTTCGAGGACGAGTCGGGGAAGTGCTGGCGCTTCCGCTACTCGTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAAGGGTGGAGCCGTTACGTGAAGGACAAGCGCCTCGATGCGGGAGATGTCGTTTTATTCCAGCGCCACCGCGCCGACGCGCAGCGCCTCTTCATCGGCTGGAGGCGCAGGCGGCAGAGCGACACCCTGCCGCCGCCTGCGCACGTTAGCAGCAGGAAGAGTGGTGGTGATGGGAATAGTAGTAAGAATGAGGGTGATGTGGGCGTGGGCTGGACCAGAGGGCTCTATCCTGCGCATCATCCTTATCCTACGCATCATCATCATCCCTCGCCATACCATCACCAACAAGATGACTCTCTTCATGCAGTTAGAGGGTCCCAAGGTCAGAACCAAAGGACGAGACCAGTGGGAAACAGCAGTTCTAGTTCGAGTTCGAGTTCAAGGGTACTTAGGCTATTCGGGGTCAACATGGAATGCCAACCCGAACATGATGATTCTGGACCCTCCACACCCCAATGCTCCTACAATACTAACAACATATTGCCATCCACACAGGGCACAGATATTCATTCCCATCTCAATTTCTACCAACAACAACAAACTTCTAATTCCAAGCCTCCCCCTCATCACATGATGATACGTCACCAACCATACTACTACTAG 1035 0.5275 MSTNHYTMDLPEPTLWWPHPHQQQLTLIDPDPLPLNLNNDDNDNGDDNDNDENQTVTTTTTGGEEEIINNKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGGDSGSSECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRADAQRLFIGWRRRRQSDTLPPPAHVSSRKSGGDGNSSKNEGDVGVGWTRGLYPAHHPYPTHHHHPSPYHHQQDDSLHAVRGSQGQNQRTRPVGNSSSSSSSSSRVLRLFGVNMECQPEHDDSGPSTPQCSYNTNNILPSTQGTDIHSHLNFYQQQQTSNSKPPPHHMMIRHQPYYY* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1704 344 CDD B3_DNA 73 172 IPR003340 GO:0003677
Gso2g1704 344 MobiDBLite consensus disorder prediction 181 272 - -
Gso2g1704 344 Gene3D - 64 189 IPR015300 -
Gso2g1704 344 MobiDBLite consensus disorder prediction 245 272 - -
Gso2g1704 344 MobiDBLite consensus disorder prediction 29 65 - -
Gso2g1704 344 MobiDBLite consensus disorder prediction 51 65 - -
Gso2g1704 344 SUPERFAMILY DNA-binding pseudobarrel domain 70 183 IPR015300 -
Gso2g1704 344 ProSiteProfiles B3 DNA-binding domain profile. 75 182 IPR003340 GO:0003677
Gso2g1704 344 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 35 303 - -
Gso2g1704 344 Pfam B3 DNA binding domain 75 181 IPR003340 GO:0003677
Gso2g1704 344 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 35 303 IPR044800 GO:0003700
Gso2g1704 344 SMART B3_2 75 182 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1704 Gso-Chr2 40507308 40510147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1704 71 298 RAV Transcription Factor Family AT5G06250 51.282 4.80e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso2g1704 B3 1.1e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1704 - - gmx:100818164 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1704 2 40507308 40510147 Gso10g0655 10 7987284 7990004 GST
Gso19g1644 19 45359027 45360930 Gso2g1704 2 40507308 40510147 PCT
Gso3g1675 3 42623638 42625628 Gso2g1704 2 40507308 40510147 PCT