Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1666 ATGGCGACATATTTTCATAGTAACTCCGAAATTCAAGCCGGCGCTGACGGCCTTCAAACTCTCGTACTAATGAACCCCGGCTACGTCCAATACTCCGACACGCCGCCACCGCCGCACGGCGGAAACCTCGTATTCCTCAACTCGGCCGCCGGCAATGCCTCCCTACAAAACCTCTCACACGCGCCGCCACCTCACACGCAGCAATTCGTCGGCGTGCCGCTATCTGCCGCCGCCGCGCACGAACCTCCGCCGCCGCCGGCGTCCATGCACCACGACGTTTCCGCCCTGCATGGCTTCCTGCCGCGCATGCAGTACAGCCTCTGGAACACAATTGACCCCAACGCGGCGGCGCGTGAGGCTCCACGCGCCACCCAGGGGTTGTCGCTGAGCCTGCACGGGGAGGAGGTGCGCGCGTCTCCGTCGTTGGCTTCCGGGGCCTCCAACGGCGGCGGCGTGGCGGGGATTCAGAGCGTGCTGTTGAGCTCCAAGTACTTGAAGGCCACGCAGGAACTTCTGGACGAGGTTGTTAATGTTAACAGCGGAATTAAGGTAGAACAAACGAAGAAGCTGTGCTTCGAGAAAACTAAGGTTGTGGGAGAATCATCAACCGCCGCTAGTGGTGGTGACGGTTCTGTTGGTGGAGAGGGAAGTGGGAAGCGCAGCTCTGAATTGTCAACTACGGAGAGACAAGAAATTCAGATGAAGAAAGCCAAGCTAATCAACATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACAGCCAGATGCAGATTGTGATATCCTCTTTCGAGCAAGCTGCTGGGATAGGCTCAGCGAGGACGTACACTGCTCTAGCATTGCAAACAATTTCAAAGCAATTTCGGTGTCTGAAGGATGCAATAACGGGGCAAATCAGAGCTGCAAACAAGAGTTTGGGGGAAGAGGATTGCTTTGGTGCTAAAATTGAAGGGTCTAGGCTCAAATATGTGGATCATCATCTAAGGCAACAGAGAGCTATTCAACAATTGGGAATGATCAATCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAGAGATCGGTTTCTGTTCTGCGTGCTTGGCTCTTTGAACACTTTCTCCACCCTTATCCCAAGGACTCGGACAAACACATGCTTGCAAAACAAACAGGGCTCACCAGAAGCCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAGATGAAAGATCATGAACTAAATGGTTCTGAGGAGAAATCAAGCAAGAATGGTGAAGATCCTGCTACAAAAACATCAACTCCACAAGAGAAACGTGCTGCCTCTGAAATTGAATCCAAAAGTTTCAATTCCAAACAAGATGTTTCCAAAAACCAGAACACTCCTATAGTTTCAACTTCTCCACCATCAACATCACCTGTAGGGGGAAGTGTTAAGAACCAATCAGGATTCAGTTTCATGGGGTCATCAGAACTTGATGGAATCACACAAGGAAGTCCTAAAAAGCCAAGGAACCATGAAATTCTACGCTCTCCAAACCGTGTCCCTTCAATCAACATGGATGTGAAAGCCAATGAGGCAAACAATGAGCAACAACTCTCTATGGATCTTGAGAGGCAGAATAGGGATGGCTACACTTTCATGGGGAACCAAACAAACTTCATTAGTGGTTTTGGACAATACCCTATGGAGGAAATTGGTAGGTTTGATGCTGAGCAATTCACACCAAGGTTTTCAGGTAATAATGGAGTTTCCCTCACTCTTGGTCTTCCTCATTGTGACACATTGTCAGGAACACACCAAAGTTTTCTCCCAAACCAAAACATTCAATTAGGAAGAGGGTTGGACATTGGTGAACCAAACCAGTTTGGTGCATTGAATAATTCCACTTCTCACTCTTCAGCAGCATTTGAGAGCATCAACATGCAGAACCCAAAGAGGTTTGCTGCACAATTGCTACCAGACTTTGTGGCCTAA 1995 0.4937 MATYFHSNSEIQAGADGLQTLVLMNPGYVQYSDTPPPPHGGNLVFLNSAAGNASLQNLSHAPPPHTQQFVGVPLSAAAAHEPPPPPASMHHDVSALHGFLPRMQYSLWNTIDPNAAAREAPRATQGLSLSLHGEEVRASPSLASGASNGGGVAGIQSVLLSSKYLKATQELLDEVVNVNSGIKVEQTKKLCFEKTKVVGESSTAASGGDGSVGGEGSGKRSSELSTTERQEIQMKKAKLINMLDEVEQRYRQYHSQMQIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDCFGAKIEGSRLKYVDHHLRQQRAIQQLGMINHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKDHELNGSEEKSSKNGEDPATKTSTPQEKRAASEIESKSFNSKQDVSKNQNTPIVSTSPPSTSPVGGSVKNQSGFSFMGSSELDGITQGSPKKPRNHEILRSPNRVPSINMDVKANEANNEQQLSMDLERQNRDGYTFMGNQTNFISGFGQYPMEEIGRFDAEQFTPRFSGNNGVSLTLGLPHCDTLSGTHQSFLPNQNIQLGRGLDIGEPNQFGALNNSTSHSSAAFESINMQNPKRFAAQLLPDFVA* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1666 664 SMART prehox3 153 297 IPR006563 -
Gso2g1666 664 CDD homeodomain 345 406 IPR001356 GO:0003677
Gso2g1666 664 Pfam Homeobox KN domain 362 401 IPR008422 GO:0003677|GO:0006355
Gso2g1666 664 Coils Coil 229 256 - -
Gso2g1666 664 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 120 - -
Gso2g1666 664 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 133 616 - -
Gso2g1666 664 MobiDBLite consensus disorder prediction 418 520 - -
Gso2g1666 664 MobiDBLite consensus disorder prediction 201 229 - -
Gso2g1666 664 MobiDBLite consensus disorder prediction 452 502 - -
Gso2g1666 664 ProSiteProfiles 'Homeobox' domain profile. 342 405 IPR001356 GO:0003677
Gso2g1666 664 SUPERFAMILY Homeodomain-like 346 412 IPR009057 -
Gso2g1666 664 SMART HOX_1 345 409 IPR001356 GO:0003677
Gso2g1666 664 MobiDBLite consensus disorder prediction 418 432 - -
Gso2g1666 664 Pfam Associated with HOX 158 296 IPR006563 -
Gso2g1666 664 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 120 - -
Gso2g1666 664 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 133 616 - -
Gso2g1666 664 Gene3D - 341 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1666 Gso-Chr2 39446964 39452387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1666 1 664 Homeobox Transcription Factor Family AT2G35940 50.398 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso2g1666 POX 1.1e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1666 - - gmx:100810851 1259.59