Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1665 ATGGACGAAATTGAAGTTCCTCAATACTTCATATGCCCAATATCCCTCCAAATCATGAAGGACCCCGTTACGGCCATAACGGGCATAACATATGATCGTGAAAGCATAGAGCAATGGCTATTCACCAACAAGAACACCACATGCCCCGTGTCCAACCAACCCCTCCCTAGAGACTCTGACCTAACCCCTAACCACACCCTTCGCCGATTGATCCAAGCTTGGTGCACCCAAAACGCTTCACTTGGCATCGTTCGGATTCCGACCCCAAAATCCCCTCTCAACAAAATACAAGTCCTTAAACTCCTCAAAGACCTCAATGACCCCAAAAGCCTCTTGCAATTGGAGCTTCTTGCCGCGGAGAGCGAGAGGAACAAAAAGTGCTTGCTAGAGGCTGGTGTGCCAAGGGCCATGATCATGTTCATTGTGAATTGTTATAAAAAGGGTCAAATTCAAAAGGGTCTCGAAGAAGCTCTTAGCATATTGCAATTTGTCAAGATCCCCAGGGAGGAATGTGCAATTCTCCTAAAGGACAACGATCAAATACTGGATTCTCTAGCATGGCTTCTAAGCCATGACGAAATGGAAAACTCCATAGCCGTGAAATCACACGCGGTTCAAGTGCTAAAAAAAATCATCAGCAAGGACGACATGTGTCGCGTTCTCGAGAGGCTCAAACCCTCGTTCTTCGAAACAATGGTGAAGATTCTAGGACATCATGCGATAACACAACAAGGGGTGAATGCTGCACTTCACGTCTTGCTAAGAGCTTCTTCCATGACACGACACAGAATCACGATGGTGGAAGCTGGTTTGGTTCACGAACTCATTGAGATCGAACTAATGGAACCAGAAAAAAGAATCACGGAACTAACCCTAGCAATATTGTTTCATTTGTGCTCTTGCGCCAACGGAAGAGCCAAGTTTCTGAGCCACGAAGGGTCCATCGCGGTGGTGACGGAGAGAATACTGAAGGTTTCGGCATCGGTGGACGATAGGGCCGTGTTTGTTCTCTCACAGGTTTCGAAGTTTTCGGGCACGACCATGGTCTTGCAGGAGATGTTGAGAGTGGGGACTGTGGCGAAGCTTTGCATGGTGCTTCAGGCTGATCGTGCCAAGTATTTGAAGGACAAAGCGATGGAGATTCTCAAGGGGCACTCTGAGGTTTGGGCGAACTCTCCTTGCATTCCCAATACGTCTTTTGGTGGATACGTGAAATACTGA 1221 0.475 MDEIEVPQYFICPISLQIMKDPVTAITGITYDRESIEQWLFTNKNTTCPVSNQPLPRDSDLTPNHTLRRLIQAWCTQNASLGIVRIPTPKSPLNKIQVLKLLKDLNDPKSLLQLELLAAESERNKKCLLEAGVPRAMIMFIVNCYKKGQIQKGLEEALSILQFVKIPREECAILLKDNDQILDSLAWLLSHDEMENSIAVKSHAVQVLKKIISKDDMCRVLERLKPSFFETMVKILGHHAITQQGVNAALHVLLRASSMTRHRITMVEAGLVHELIEIELMEPEKRITELTLAILFHLCSCANGRAKFLSHEGSIAVVTERILKVSASVDDRAVFVLSQVSKFSGTTMVLQEMLRVGTVAKLCMVLQADRAKYLKDKAMEILKGHSEVWANSPCIPNTSFGGYVKY* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1665 406 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Gso2g1665 406 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Gso2g1665 406 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Gso2g1665 406 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 400 - -
Gso2g1665 406 SUPERFAMILY RING/U-box 3 79 - -
Gso2g1665 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Gso2g1665 406 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630
Gso2g1665 406 Gene3D - 98 391 IPR011989 -
Gso2g1665 406 CDD RING-Ubox_PUB 10 53 IPR045210 -
Gso2g1665 406 SUPERFAMILY ARM repeat 101 366 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1665 Gso-Chr2 39388660 39390508 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1665 2 395 U-box Gene Family AT3G11840 42.177 2.15e-115 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1665 - - gmx:100798446 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1678 19 45703695 45705325 Gso2g1665 2 39388660 39390508 PCT
Gso3g1707 3 42925444 42927116 Gso2g1665 2 39388660 39390508 PCT