Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1662 ATGGACGAGATCGACGTGCCTCCGTTCTTCGTGTGCCCTATTTCATTAGAGCTCATGAAGGACCCCGTGACGGTCTCCACCGGCATCACCTACGACCGCGACAGCATCGAGAAGTGGCTCTTCGCCGAGGTGAAGAACGACACGTGTCCCGTCACGAAGCAGCCCCTCCTCCCGGACCTCACTCCGAACCACACGCTCCGCAGACTCATCCAAGCCTGGTGCACCGTCAACGCCTCCCACGGCGTCCAGAGAATCCCCACACCAAAACCACCGGTCGACAAAACCCTCATCGAGAAACTCCTCCGCAACACCTCGGCTTCGGACTCCCCGAGCCTCCAGCTCCGGTCCCTCCGAACCCTCAAGTCCATTGCCTCGGAATCCCAATCAAACAAACGCTGCATCGAATCTGCAGAAGGCGCAGTTAATTTCCTAGCAACAATTATAACCACCACCACCACCACCACCACCAACCTACTCGATGATGACATCGAGTTGGAAATAAAAACAAGTACAGCCCACGAAGCATTGAGCCTTTTACACAGCATTCAGCTGTCAGAGTCCGGTTTGAAGGCTCTGTTGAACCATCCAGAATTTATAAACTCTCTAACCAAGATGATGCAAAGAGGGATCTACGAGTCACGCGCCTACGCTGTTTTCTTGCTGAATTCCTTGTCCGAGGTGGCGGATCCGGCGCAGTTGATTAACCTAAAAACTGATTTGTTCACTGAATTGGTTCAGGTTCTTAAGGATCAGGTTTCGGAGAAGGTCTCGAAGGCGACCCTGCAGGCATTGATTCAGGTGTGTTCGTGGGGCAGAAATAGGGTGAAGGCTGTGGAGGCTGGAGCTGTGCCGGTTCTGGTGGAGCTTCTTCTCGAATGCAACGAGAGAAAACCGATAGAAATGGTGCTGGTTTTGTTGGAGATTTTATGTCAGAGTGCTGACGGGAGGGCGGGGCTGTTGGCCCACGCGGCGGGGGTGGTGATCGTGGCGAAGAAGATTCTGAGGGTTTCAACGATGGCGAACGATAGGGCGGCGAAGATTCTGCTTTCGGTGTGCAGATTTTCCCCCACGCCGGGCTTGGTGCAGGAGATGGTGCAGCTTGGGGTGGTGGCAAAGCTTTGTCTGGTGCTGCAGGTGGATAGTGGGAACAAAGCAAAAGAGAAAGCTAGGGAGATTCTCAAATTGCATGCTAGGGCTTGGAGGAATTCGCCTTGCATACCTCACAATTTGCTTGCTTCGTTTCCAATGAGTTCGTGA 1257 0.5346 MDEIDVPPFFVCPISLELMKDPVTVSTGITYDRDSIEKWLFAEVKNDTCPVTKQPLLPDLTPNHTLRRLIQAWCTVNASHGVQRIPTPKPPVDKTLIEKLLRNTSASDSPSLQLRSLRTLKSIASESQSNKRCIESAEGAVNFLATIITTTTTTTTNLLDDDIELEIKTSTAHEALSLLHSIQLSESGLKALLNHPEFINSLTKMMQRGIYESRAYAVFLLNSLSEVADPAQLINLKTDLFTELVQVLKDQVSEKVSKATLQALIQVCSWGRNRVKAVEAGAVPVLVELLLECNERKPIEMVLVLLEILCQSADGRAGLLAHAAGVVIVAKKILRVSTMANDRAAKILLSVCRFSPTPGLVQEMVQLGVVAKLCLVLQVDSGNKAKEKAREILKLHARAWRNSPCIPHNLLASFPMSS* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1662 418 CDD RING-Ubox_PUB 10 54 IPR045210 -
Gso2g1662 418 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Gso2g1662 418 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Gso2g1662 418 SUPERFAMILY ARM repeat 89 401 IPR016024 -
Gso2g1662 418 Gene3D - 84 402 IPR011989 -
Gso2g1662 418 SUPERFAMILY RING/U-box 3 80 - -
Gso2g1662 418 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Gso2g1662 418 PANTHER WDSAM1 PROTEIN 1 416 IPR045185 GO:0061630
Gso2g1662 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Gso2g1662 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1662 Gso-Chr2 39213897 39215616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1662 2 415 U-box Gene Family AT2G35930 54.394 3.21e-162 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1662 - - gmx:100795263 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1662 2 39213897 39215616 Gso10g0717 10 9917985 9919753 GST
Gso2g1662 2 39213897 39215616 Gso19g1678 19 45703695 45705325 PCT
Gso2g1662 2 39213897 39215616 Gso3g1707 3 42925444 42927116 PCT