Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1658 ATGAACGACTTGTTCTCCGGTTCCTTCTCCCGCTTCCGCAGCGACCAGTCCTCCCCGGACCGCCACCACGACATCGAGATGGGCGCCACCGCCTCCGGCGGCGGTCGCGGCGGCGAGGTGAACCTTGACAAGTTCTTCGAGGACGTGGAAGGCGTGAAGGAGGAACTAAAGGAGTTGGAAGGTTTGGCTCAGAGTCTAAGGAGCAGCCACGAGCAGAGCAAGACGCTGCACAACGCGAAGGCGGTGAGGGACCTGCGCGCGCGCATGGACGGCGACGTCTCGGCGGCGCTGAAGAAGGCGAAGCTGATCAAGCTCAAGCTCGAGGCGCTGGAGCGGTCCAACGCCGCGAACCGGAACATGCCTGGGTGTGGACCGGGTTCGTCCTCGGACCGGACCCGGACCTCCGTGGTCAACGGGCTCAAGAAGAAGCTGAAGGATGCTATGGAGAGTTTTAACGAGATTCGCCAGCTTGTGTCCTCGGAGTACCGCGAGACCGTGCAGCGGCGGTACTTCACCGTCACCGGCGAGAATCCCGATGACAAGACTCTCGATCTCTTGATCTCCACTGGTGAGAGTGAGACTTTCCTTCAGAAGGCCATTCAAGAGCAAGGAAGGGGTAGAATTCTGGACACCATCACGGAGATTCAAGAGAGGCATGATGCTGTCAAAGAGATAGAAAAGAATCTCAAGGAGTTGCACCAAGTGTTCCTTGACATGACAGTGTTGGTGCAACATCAAGGTGAGCAATTGGATGATATTGAGAGCCATGTGGCAAGAGCTCATTCGTTTGTGCGCACTGGAGCTGAGCAGTTGCAGACTGCGCGGAAGCACCAGAAGAACACCAGGAAATGGACCTGCTATTGTATCATACTTCTTCTGGTGATCATCTTGTTTGTGGTGCTCTTCACTGTGAAGCCGTGGGAAAATAGCAGTAGTGGCGGCAATGGGGGTGGTCAGCCTGCACCAGCTCAAACACCTCCATCACCTTCACCTCCTGTTAATGCTTAA 1008 0.5615 MNDLFSGSFSRFRSDQSSPDRHHDIEMGATASGGGRGGEVNLDKFFEDVEGVKEELKELEGLAQSLRSSHEQSKTLHNAKAVRDLRARMDGDVSAALKKAKLIKLKLEALERSNAANRNMPGCGPGSSSDRTRTSVVNGLKKKLKDAMESFNEIRQLVSSEYRETVQRRYFTVTGENPDDKTLDLLISTGESETFLQKAIQEQGRGRILDTITEIQERHDAVKEIEKNLKELHQVFLDMTVLVQHQGEQLDDIESHVARAHSFVRTGAEQLQTARKHQKNTRKWTCYCIILLLVIILFVVLFTVKPWENSSSGGNGGGQPAPAQTPPSPSPPVNA* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1658 335 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 212 274 IPR000727 -
Gso2g1658 335 PANTHER SYNTAXIN 7 312 IPR045242 -
Gso2g1658 335 CDD SynN 42 199 IPR006011 GO:0016020
Gso2g1658 335 MobiDBLite consensus disorder prediction 309 335 - -
Gso2g1658 335 ProSitePatterns Syntaxin / epimorphin family signature. 218 257 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso2g1658 335 SUPERFAMILY t-snare proteins 40 267 IPR010989 GO:0016020|GO:0016192
Gso2g1658 335 CDD SNARE_syntaxin1-like 211 273 - -
Gso2g1658 335 SMART tSNARE_6 207 274 IPR000727 -
Gso2g1658 335 Gene3D - 207 305 - -
Gso2g1658 335 Pfam Syntaxin 44 247 IPR006011 GO:0016020
Gso2g1658 335 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 7 312 - -
Gso2g1658 335 Gene3D - 39 172 - -
Gso2g1658 335 Coils Coil 42 69 - -
Gso2g1658 335 SMART SynN_4 37 163 IPR006011 GO:0016020
Gso2g1658 335 MobiDBLite consensus disorder prediction 1 39 - -
Gso2g1658 335 Pfam SNARE domain 248 300 IPR000727 -
Gso2g1658 335 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1658 Gso-Chr2 39072902 39075390 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1658 31 324 SNARE and Associated Proteins AT3G11820 72.403 2.96e-154 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1658 K08486 - gmx:100809258 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1658 2 39072902 39075390 Gso10g0724 10 10037970 10040831 GST