Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1657 ATGAACGACTTGTTCTCCGGCTCCTTCTCCCGCACCAATGACCAAGTCTCGCCGGACCACCACCATGTGATCGAGATGGCGGCCACCGCATCGCCAACGGCCGAGGGAAGCGTGAATCTCGAAAAGTTCTTTCAAGAAGTTGAGCAGGTAAAAGAGGAGCTGAAGGAGCTAGAGCGTCTCCATGAAAATCTGCGTGGGTCCCACGAGAAAAGCAAGATCCTTCACAGCGCCAAAGCTGTGAAGGAACTTCGCTTACGCATGGACAGTGACGTGACACTTGCTCTAAAGAATGCAAAGCTCGTTAAGGTTCGGCTTGAGGCACTGGACCGGTCCAACCAGACCAGTCAAAGCTTGCCTGGTTCGGGACCTGGTTCGTCCTCAGACCGGACCAGAACGTCCGTTGTGAGCGGACTGAGGAAGAAGCTGAAGGACTCGATGGACAGCTTCAACAGCCTCAGACAAAAGATATCGTCAGAGTATAGGGAAACCGTGCAGCGTAGATATTATACTGTCACCGGAGAGAACCCTGATGACAAAACCATTGATCTCCTTATTTCTACGGGTGAGAGTGAAACATTCTTGCAGAAGGCGATCCAGCAGCAAGGTAGAGCCAGTGTGATGGACACGATCCAAGAGATTCAAGAGAGGCACGACACAGTCAAGGAAATAGAGAGAAACCTAAACGAGCTCCACCAAGTGTTCTTGGACATGGCCGTGCTGGTGCAGTCCCAGGGCGAACAACTGGACGACATCGAGAGCCACGTGGCACGCGCCAATTCGTACGTGCGGGGTGGGGTCCAGCAGTTGCACGTGGCAAGGAAGCACCAGAAGAACACCCGAAAGTGGACATGCATAGCCATCATACTGCTCATTATTATCATCTTGATTATAGTCCTCCCTATAGTTCTAAGAAATTGA 918 0.5174 MNDLFSGSFSRTNDQVSPDHHHVIEMAATASPTAEGSVNLEKFFQEVEQVKEELKELERLHENLRGSHEKSKILHSAKAVKELRLRMDSDVTLALKNAKLVKVRLEALDRSNQTSQSLPGSGPGSSSDRTRTSVVSGLRKKLKDSMDSFNSLRQKISSEYRETVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIQQQGRASVMDTIQEIQERHDTVKEIERNLNELHQVFLDMAVLVQSQGEQLDDIESHVARANSYVRGGVQQLHVARKHQKNTRKWTCIAIILLIIIILIIVLPIVLRN* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1657 305 SMART SynN_4 35 161 IPR006011 GO:0016020
Gso2g1657 305 MobiDBLite consensus disorder prediction 111 136 - -
Gso2g1657 305 SUPERFAMILY t-snare proteins 39 265 IPR010989 GO:0016020|GO:0016192
Gso2g1657 305 Pfam SNARE domain 246 298 IPR000727 -
Gso2g1657 305 Coils Coil 40 70 - -
Gso2g1657 305 Gene3D - 38 170 - -
Gso2g1657 305 Pfam Syntaxin 42 245 IPR006011 GO:0016020
Gso2g1657 305 Gene3D - 199 303 - -
Gso2g1657 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
Gso2g1657 305 CDD SNARE_syntaxin1-like 209 269 - -
Gso2g1657 305 CDD SynN 40 197 IPR006011 GO:0016020
Gso2g1657 305 MobiDBLite consensus disorder prediction 111 133 - -
Gso2g1657 305 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 11 300 - -
Gso2g1657 305 SMART tSNARE_6 205 272 IPR000727 -
Gso2g1657 305 ProSitePatterns Syntaxin / epimorphin family signature. 216 255 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso2g1657 305 PANTHER SYNTAXIN 11 300 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1657 Gso-Chr2 39067090 39069828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1657 26 284 SNARE and Associated Proteins AT3G11820 72.973 3.31e-138 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1657 K08486 - gmx:100808718 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1657 2 39067090 39069828 Gso10g0725 10 10043710 10046280 GST
Gso19g1681 19 45738865 45741250 Gso2g1657 2 39067090 39069828 PCT
Gso3g1712 3 42989206 42991640 Gso2g1657 2 39067090 39069828 PCT
Gso2g1657 2 39067090 39069828 Gso19g1681 19 45738865 45741250 PCT
Gso2g1657 2 39067090 39069828 Gso3g1712 3 42989206 42991640 PCT