Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1656 ATGGCGATGCAAACCGTTTATCTGAAAGAACATGAAGGACTTGTCCACAGTTCTGTTGGGCAGTTGTCATCTGTAACTTCAGCTCCCTGGTGGAGTGCCTTAGGATCTCAACCAGTTTACGGGGAGTATTGTGGTCAAATGAAGTCCTTTTCATTGGAGATTTCCAACTATGTGGACCAATTTGGTGCTGGTAAGCAAGCGGCACGAGGAGTTGAGCAATTGTCGGATAAAGGACATACAACTCAGTTTACCATCTTTCCAGGTATCTCTTCTTCAGATGATTGTAAGATGTCAGGTGATGCACAAAATCCTCAGGCAACATTATCACTGCAATCATCACTGGCTGAGCCCCACAATCGTTTTGAGATAGGGGTTAATCAGCCTATGATCTGTGCAAAATATCCTTATATGGATCAATTTTATGGACTCTTCTCAGCATATGGACCTCAAATTTCGGGACGGATAATGCTTCCAATTAACTTGACATCCGATGAAGGACCAACTTACGTAAATGCTAAGCAGTACCATGGAATTATCAGACGTAGGCAATCACGTGCAAAAGCCGTACTTGAGAACAAAATGATAAAACGTCGCAAGCCTTATATGCATGAATCACGCCATCTACATGCGACGCGGCGACCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAAAAGCTCTACTGATGGAAATGGTAAAAATGAAAGTGAAGTGATTAAAACCAGCGGCCGACAATTCCAGTCCAGTGCCTCTCAGAGTTCTGAAGTCCTGCAGTCTGAGGTTGGAATGTTAAATTCATCAAAGCAGACAAATCGAAGCAGTCCAAACATCTCTGGTTCAGAGGTGACTAGCATGTATTCAAGGGAAGGTTTTGATGGCTTTTCTGTCAATCCTCTTGGATCTTCCGTCCACTCTCTAGCAGACATGATAGGTAGTGAGCATGGTATCATTAGGCCCACTAAATGGGTTGCAGCAGTACCAGGTAACTGCTACAACCTTAAAATTTGA 1008 0.4375 MAMQTVYLKEHEGLVHSSVGQLSSVTSAPWWSALGSQPVYGEYCGQMKSFSLEISNYVDQFGAGKQAARGVEQLSDKGHTTQFTIFPGISSSDDCKMSGDAQNPQATLSLQSSLAEPHNRFEIGVNQPMICAKYPYMDQFYGLFSAYGPQISGRIMLPINLTSDEGPTYVNAKQYHGIIRRRQSRAKAVLENKMIKRRKPYMHESRHLHATRRPRGCGGRFLNTKSSTDGNGKNESEVIKTSGRQFQSSASQSSEVLQSEVGMLNSSKQTNRSSPNISGSEVTSMYSREGFDGFSVNPLGSSVHSLADMIGSEHGIIRPTKWVAAVPGNCYNLKI* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1656 335 MobiDBLite consensus disorder prediction 205 236 - -
Gso2g1656 335 MobiDBLite consensus disorder prediction 221 236 - -
Gso2g1656 335 ProSiteProfiles NF-YA/HAP2 family profile. 164 224 IPR001289 GO:0003700|GO:0006355
Gso2g1656 335 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 334 IPR001289 GO:0003700|GO:0006355
Gso2g1656 335 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 167 221 IPR001289 GO:0003700|GO:0006355
Gso2g1656 335 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 334 - -
Gso2g1656 335 SMART cbf3 163 224 IPR001289 GO:0003700|GO:0006355
Gso2g1656 335 Gene3D - 165 225 - -
Gso2g1656 335 PRINTS CCAAT-binding transcription factor subunit B signature 167 189 IPR001289 GO:0003700|GO:0006355
Gso2g1656 335 PRINTS CCAAT-binding transcription factor subunit B signature 198 221 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1656 Gso-Chr2 39051870 39057368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1656 1 334 CCAAT-HAP2 Transcription Factor Family AT3G05690 40.000 1.09e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gso2g1656 CBFB_NFYA 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1656 K08064 - gmx:100808195 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1656 2 39051870 39057368 Gso10g0728 10 10088948 10093915 GST
Gso19g1684 19 45751065 45755495 Gso2g1656 2 39051870 39057368 PCT
Gso3g1714 3 42998723 43003612 Gso2g1656 2 39051870 39057368 PCT
Gso2g1656 2 39051870 39057368 Gso19g1684 19 45751065 45755495 PCT
Gso2g1656 2 39051870 39057368 Gso3g1714 3 42998723 43003612 PCT