Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1650 ATGAGCAACAAGCGTAACCTTCAAGTTACGTTCTCAAAGCGTCGCACCGGAATTTTCAAGAAGGCTAGTGAGCTTACCACCCTTTGTGGCATGAATCTTGCTGTAATTATGTCCTCACCTGGTAATCGGGTTTTCTCCTTCGGCAGCCCTAGTGTGGATTCTGTTATTCAACACTACACCGCACAGGGCCCACCTCCCCTCCTCAACCTAGAGCTGAATGAGGCCTCCATAGACGAGCATGAGCTCCATGTGCACCTTAACAACTTGTCCGACCAAATTGCTGCAGAGAAGAAGCACAAAAAGGATCTAAATCGTATGTTGAATGCTGCGGAGGAACACGTTTGGTTTGTCATGCCAATCAAAAGCATGAATGATGCCCAACTAGAGACGTATAAGAAAATGTTGGAGGAGCTAAAGACGTATGCTAATGAAAAACGTGAGAAGCTCCTCCAGCGCCTTCCCAACACCTCTATGGGAGTAGCCACACTGACCCATGACTTTAGGTTTTAA 510 0.4686 MSNKRNLQVTFSKRRTGIFKKASELTTLCGMNLAVIMSSPGNRVFSFGSPSVDSVIQHYTAQGPPPLLNLELNEASIDEHELHVHLNNLSDQIAAEKKHKKDLNRMLNAAEEHVWFVMPIKSMNDAQLETYKKMLEELKTYANEKREKLLQRLPNTSMGVATLTHDFRF* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1650 169 Coils Coil 124 148 - -
Gso2g1650 169 Coils Coil 86 113 - -
Gso2g1650 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 2 47 IPR002100 GO:0003677|GO:0046983
Gso2g1650 169 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 1 142 - -
Gso2g1650 169 SUPERFAMILY SRF-like 2 70 IPR036879 GO:0003677|GO:0046983
Gso2g1650 169 Gene3D - 3 65 IPR036879 GO:0003677|GO:0046983
Gso2g1650 169 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Gso2g1650 169 PANTHER MADS BOX PROTEIN 1 142 - -
Gso2g1650 169 PRINTS MADS domain signature 13 28 IPR002100 GO:0003677|GO:0046983
Gso2g1650 169 PRINTS MADS domain signature 28 49 IPR002100 GO:0003677|GO:0046983
Gso2g1650 169 SMART madsneu2 1 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1650 Gso-Chr2 38930508 38931017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1650 1 162 Type I MADS-box Gene Family AT5G60440 39.645 1.35e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso2g1650 SRF-TF 8.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1650 - - gmx:102660041 332.413