Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1649 ATGGATTCAAAAAGCGTGCCAAGCTTGAAAGGCAGGATCAAGAAGACCAAAGGTCAACAAAAGATCGAGATGAAGAAGGTGAACAATGAGCGTTACCTTCAAGTGACGTTCTCAAAGCGTCGCACTGAGATTTTCAAGAAAGCAAGTGAGCTTGCCCCCCTCTACAGTGTGGACCTTGCTCCCCATCTCCCACTCTTATCCTACAACACCATGGACGAGCATAAGCTCCACGCACACCTCAATGACCTGGCCAACCGATTAGCCAAGGAAAAGAAGCACATAGAGGATTTGAATCATTTGTTACAGGTTGCGGAGGATCACTTTTGGTGGGCCATACCAATTGAAAGAATAAACAGTGCCCAAGTCGAGAAGTATAAGAGGCTGTTGGAGGAGCTGAAGACACATGTCGATGAAAAATATGAGAAGCTTCTCTTTGAGGGCATTCTTACTTATAACTCATCAACTCAGTTTTTTTTACAGGTGGAAGCTCTTATTCCAATGTTAATAGCACTTTGA 516 0.4399 MDSKSVPSLKGRIKKTKGQQKIEMKKVNNERYLQVTFSKRRTEIFKKASELAPLYSVDLAPHLPLLSYNTMDEHKLHAHLNDLANRLAKEKKHIEDLNHLLQVAEDHFWWAIPIERINSAQVEKYKRLLEELKTHVDEKYEKLLFEGILTYNSSTQFFLQVEALIPMLIAL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1649 171 ProSiteProfiles MADS-box domain profile. 17 60 IPR002100 GO:0003677|GO:0046983
Gso2g1649 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 60 IPR002100 GO:0003677|GO:0046983
Gso2g1649 171 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 70 139 - -
Gso2g1649 171 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 17 60 - -
Gso2g1649 171 Coils Coil 80 107 - -
Gso2g1649 171 SUPERFAMILY SRF-like 17 60 IPR036879 GO:0003677|GO:0046983
Gso2g1649 171 SMART madsneu2 17 71 IPR002100 GO:0003677|GO:0046983
Gso2g1649 171 Gene3D - 29 68 IPR036879 GO:0003677|GO:0046983
Gso2g1649 171 PANTHER MADS BOX PROTEIN 70 139 - -
Gso2g1649 171 PANTHER MADS BOX PROTEIN 17 60 - -
Gso2g1649 171 Coils Coil 122 142 - -
Gso2g1649 171 MobiDBLite consensus disorder prediction 1 21 - -
Gso2g1649 171 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Gso2g1649 171 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1649 Gso-Chr2 38883024 38883624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1649 13 133 Type I MADS-box Gene Family AT5G60440 33.333 5.70e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso2g1649 SRF-TF 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1649 - - gsj:114375939 341.658