Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1635 ATGGAGGTTCCAGAAATGGAAGGCAAGACTGAAAGTCATATGACATCAGCAGCAGCCTTTGTGGAAGGGGGGGTTCAAGAAGCTTGTGATGATGCTTGCAGCATATGCCTTGAGGATTTTTGCAAAAGTGATCCTGCCACTGTCACTAATTGCAAGCATGAGTTCCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAACCTATCAGCTTGAGGGATGCTACCAGTCAAGAGCTGCTTGAGGCAGTAGAGCTGGAGAGGAGCTTGAGAGATACTCCATCAAGAAATGCTGCGATTTTTCATCATCCAACACTTGGTGATTTTGAATTGCAGCATTTACCCATGGGTGTGAATGAGGCCGATATTGAAGAGCGAATAATTCAACATTTAACTGCTGCAGCCGCAATGAGGAGATCTCATCACCTCAGCCGGAGGGAAGGCCATCGAACTAGGCCATCTGCTCATGGCCGTCCACACTTCTTAGTATACTCAACTCAGCCTAGTGCACCACCATCAGCTGCAGGAGGGGGAAGTGAACCAGCTGCAATTCCTGTAGGAAGTCCATCTACCCCACTTACATTTGATGGAAATGAGCAATCATCACTACAGCAGATCCCCCATGTTCAAACTCAGAGTTCTTCTTTAACTTCTGCCTCTACTGTCTCAACAACAAATCTTCAAGGAGTTCACTCTGATGATAGAAGTTTTGCCTCTCATTCTTTTCCTGCAAGCCAAGACAGAGCACAGCCATCAGAACAATCATTCTCTGATTCTCTGCGCTCCAGATTTAATGCAGTATCCATGAGATACAAAGATTCAATTTCGAAGGGCACAAGGGGATGGAAGGAGAGGCTCTTCTCTCCCAATTCTTCTATGTCAGAACTTGGTTCAGAAGTTAGGAGAGAATTGAATGCTAAAATTGCTAGCGTGTCCCGATTGATGGAGCGCCTTGAAACAAGAGAAAATAATAGTGCTGCAGGAACTTCTTTATCAAATCATTTGGTGAACCGTTCCATTGCAGAGACAAGCAACCAAAGCAATGTGGAAGCTCGTGGAGAGAACTCTTTGCATGGCAATAATACTCCAACTACTTTTTCTGCAAGCTCAGATTCAAAATGA 1143 0.4523 MEVPEMEGKTESHMTSAAAFVEGGVQEACDDACSICLEDFCKSDPATVTNCKHEFHLQCILEWCQRSSQCPMCWQPISLRDATSQELLEAVELERSLRDTPSRNAAIFHHPTLGDFELQHLPMGVNEADIEERIIQHLTAAAAMRRSHHLSRREGHRTRPSAHGRPHFLVYSTQPSAPPSAAGGGSEPAAIPVGSPSTPLTFDGNEQSSLQQIPHVQTQSSSLTSASTVSTTNLQGVHSDDRSFASHSFPASQDRAQPSEQSFSDSLRSRFNAVSMRYKDSISKGTRGWKERLFSPNSSMSELGSEVRRELNAKIASVSRLMERLETRENNSAAGTSLSNHLVNRSIAETSNQSNVEARGENSLHGNNTPTTFSASSDSK* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1635 380 MobiDBLite consensus disorder prediction 149 163 - -
Gso2g1635 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 90 IPR013083 -
Gso2g1635 380 SUPERFAMILY RING/U-box 26 80 - -
Gso2g1635 380 SMART ring_2 33 73 IPR001841 -
Gso2g1635 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 7 379 - -
Gso2g1635 380 MobiDBLite consensus disorder prediction 198 266 - -
Gso2g1635 380 MobiDBLite consensus disorder prediction 145 266 - -
Gso2g1635 380 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 7 379 - -
Gso2g1635 380 MobiDBLite consensus disorder prediction 327 380 - -
Gso2g1635 380 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Gso2g1635 380 Pfam Ring finger domain 32 73 IPR001841 -
Gso2g1635 380 MobiDBLite consensus disorder prediction 329 380 - -
Gso2g1635 380 Coils Coil 308 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1635 Gso-Chr2 38474527 38478892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1635 30 81 C3H Transcription Factor Family AT4G00335 46.154 4.58e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1635 K19043 - gmx:100803582 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1635 2 38474527 38478892 Gso10g0749 10 10515265 10519577 GST
Gso19g1693 19 45867379 45874693 Gso2g1635 2 38474527 38478892 PCT
Gso3g1726 3 43107105 43112434 Gso2g1635 2 38474527 38478892 PCT
Gso2g1635 2 38474527 38478892 Gso19g1693 19 45867379 45874693 PCT
Gso2g1635 2 38474527 38478892 Gso3g1726 3 43107105 43112434 PCT