Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1624 ATGGAAGTAGAGAAGGAAAATACCACATCTACTATTACTGCAGAACCCTCAGTATCTGCCTCTGATGGTCAAGATCCTGTTTCTTCTGTTAATGCATCTCTACCCGATCCTATGCAACCTGTTATTCCACAGGTTATTGCACCTTTTGTTGTACCTTCTTTAGCTCCAATTCCTGCAATTCCTCCGCCTCGCCCACTGGCACCGCTTCCAGTTCGGTCACCTGTCATTAGGCCACCTGTGCCACAAAATGGCGAGGTTGGATCAAGTGACTCTGATTCAGACAATGATGATTCAAATGCAAGAATTAACCAAGGGGGTGGGGAGTATGAGATATCGGAAGAGAGTAGACTGGTGAGAGAGCGGCAGGAAAAGGCAATGCAGGAGCTCATGATGAAGAGGCGTGCTGCTGCTCTTGCTGTTCCTACGAATGATATGGCCGTGCGAGCTCGCCTTCGACATCTTGGTGAAGCTATAACTCTGTTTGGTGAGAGGGAGATGGAGAGACGGGACAGATTGCGGATGATTATGGCGAAGCTGGATGCAGAAGGTCAGCTGGAGAAGCTGATGAAAGCTCATGAGGAAGAAGAGGCTGTGGCTTCTGCTTCGAAAGATGAGGCTGAGGAAGAACTGCAGTATCCTTTTTACACTGAAGGGTCAAAGGCTCTCCTGGATTCCAGAATTTATATTGCTAAATATTCTTTGGCAAGGGCAGCATTACGGATTCAACGTGCACAGAGGAGAAGGGATGATCCAGATGAAGATATGGATGCAGAGATGGATTGGGCATTGAAGCAGGCTGGGAATTTGAGTCTTGAATTCAGTGAAATTGGAGATGATCGACCACTTTCTGGTTGCTCCTTCTCAAGGGATGGAAAATGGCTTGCTACCTGTTCTCTGACAGGAGCTTCCAAGTTGTGGAGCATGCCCAAAATAAAAAAGCATTCCATCTTCAAGGGTCACACAGAGCGTGCTACTGATGTTGCTTATTCTCCTGTTCATGATCATTTAGCAACTGCCTCTGCTGATCGAACAGCAAAGTATTGGAATCAAGGATCTCTACTGAAGACATTTGAGGGTCATCTAGACCGTCTTGCCCGCATTGCCTTCCATCCATCAGGGAAGTACCTGGGTACTGCTAGCTTTGACAAGACATGGAGATTATGGGACATAGAAACAGGAGACGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTCTGGCTTTCCACAATGATGGATCATTAGCTGCATCTTGTGGACTAGACTCTCTGGCTCGTGTTTGGGACCTCCGAACTGGAAGAAGTATTCTTGCACTGGAAGGTCATGTCAAACCGGTTCTCAGCATCAGTTTTTCACCCAATGTATATCATCTAGCCACGGGTGGTGAAGACAACACTTGTCGGATTTGGGATTTGAGGAAGAAGAAATCCTTTTATACTATTCCTGCCCACTCTAATTTAATATCACAAGTTAAATTTGAGCCACACGAAGGTTACTTTTTGGTAACTGCCTCATATGACATGACTGCTAAGGTTTGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCTGGGCATGAAGCTAAAGTTACTTCTGTGGATGTTCTTGGTGATGGCGGGTCTATTGTTACTGTCTCACATGATCGCACCATAAAGCTGTGGTCCAGCAATCCGACTGATGAACAAGCTATGGATGTTGACTAA 1713 0.46 MEVEKENTTSTITAEPSVSASDGQDPVSSVNASLPDPMQPVIPQVIAPFVVPSLAPIPAIPPPRPLAPLPVRSPVIRPPVPQNGEVGSSDSDSDNDDSNARINQGGGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRHLGEAITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEEEEAVASASKDEAEEELQYPFYTEGSKALLDSRIYIAKYSLARAALRIQRAQRRRDDPDEDMDAEMDWALKQAGNLSLEFSEIGDDRPLSGCSFSRDGKWLATCSLTGASKLWSMPKIKKHSIFKGHTERATDVAYSPVHDHLATASADRTAKYWNQGSLLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGDELLLQEGHSRSVYGLAFHNDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLSISFSPNVYHLATGGEDNTCRIWDLRKKKSFYTIPAHSNLISQVKFEPHEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSVDVLGDGGSIVTVSHDRTIKLWSSNPTDEQAMDVD* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1624 570 SMART WD40_4 310 349 IPR001680 GO:0005515
Gso2g1624 570 SMART WD40_4 266 307 IPR001680 GO:0005515
Gso2g1624 570 SMART WD40_4 519 558 IPR001680 GO:0005515
Gso2g1624 570 SMART WD40_4 476 516 IPR001680 GO:0005515
Gso2g1624 570 SMART WD40_4 434 473 IPR001680 GO:0005515
Gso2g1624 570 SMART WD40_4 392 431 IPR001680 GO:0005515
Gso2g1624 570 SMART WD40_4 350 389 IPR001680 GO:0005515
Gso2g1624 570 MobiDBLite consensus disorder prediction 71 116 - -
Gso2g1624 570 Gene3D - 441 567 IPR015943 GO:0005515
Gso2g1624 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 483 516 - -
Gso2g1624 570 PANTHER BNAC04G01920D PROTEIN 107 562 - -
Gso2g1624 570 Gene3D - 118 188 IPR036285 -
Gso2g1624 570 ProSitePatterns Trp-Asp (WD) repeats signature. 460 474 IPR019775 -
Gso2g1624 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 526 558 - -
Gso2g1624 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 349 IPR001680 GO:0005515
Gso2g1624 570 SUPERFAMILY PRP4-like 125 180 IPR036285 -
Gso2g1624 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 393 - -
Gso2g1624 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 526 558 IPR001680 GO:0005515
Gso2g1624 570 Pfam pre-mRNA processing factor 4 (PRP4) like 147 173 IPR014906 -
Gso2g1624 570 ProSitePatterns Trp-Asp (WD) repeats signature. 376 390 IPR019775 -
Gso2g1624 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 399 436 - -
Gso2g1624 570 PANTHER WD40 REPEAT PROTEIN 107 562 - -
Gso2g1624 570 MobiDBLite consensus disorder prediction 1 35 - -
Gso2g1624 570 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Gso2g1624 570 PRINTS G protein beta WD-40 repeat signature 376 390 IPR020472 -
Gso2g1624 570 PRINTS G protein beta WD-40 repeat signature 460 474 IPR020472 -
Gso2g1624 570 ProSitePatterns Trp-Asp (WD) repeats signature. 418 432 IPR019775 -
Gso2g1624 570 SUPERFAMILY WD40 repeat-like 272 557 IPR036322 GO:0005515
Gso2g1624 570 Gene3D - 255 440 IPR015943 GO:0005515
Gso2g1624 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 483 525 IPR001680 GO:0005515
Gso2g1624 570 Pfam WD domain, G-beta repeat 351 389 IPR001680 GO:0005515
Gso2g1624 570 Pfam WD domain, G-beta repeat 400 431 IPR001680 GO:0005515
Gso2g1624 570 Pfam WD domain, G-beta repeat 315 349 IPR001680 GO:0005515
Gso2g1624 570 Pfam WD domain, G-beta repeat 521 558 IPR001680 GO:0005515
Gso2g1624 570 Pfam WD domain, G-beta repeat 480 516 IPR001680 GO:0005515
Gso2g1624 570 Pfam WD domain, G-beta repeat 439 473 IPR001680 GO:0005515
Gso2g1624 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 349 - -
Gso2g1624 570 CDD WD40 281 558 - -
Gso2g1624 570 Coils Coil 178 209 - -
Gso2g1624 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 398 IPR001680 GO:0005515
Gso2g1624 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 441 482 IPR001680 GO:0005515
Gso2g1624 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 441 475 - -
Gso2g1624 570 SMART pr04_2 142 195 IPR014906 -
Gso2g1624 570 MobiDBLite consensus disorder prediction 1 39 - -
Gso2g1624 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 440 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1624 Gso-Chr2 37970305 37975258 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1624 361 557 U-box Gene Family AT2G33340 22.172 1.11e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1624 K12662 - gmx:100800927 1048.88