Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1617 ATGGCGAGAAAGAAGGTTGATCTTGCATACATAAGCAATCCCAAGAAGAGGAAGGAAGTATTGAAGAAAAGGAAAAATGGTTTGCTAAAAAAGGTTGATGAAATCACTACCCTTTGTGGCATTGAGGCTTGTGCTATCATTTATAGTCCAGACGAACCTGAGCCTCAGGTTTGGTCATCTGACCAAGGAGTGGAAAGTGTGATTTTCAAGTTTAGGGGAGTTTCTGAATTGACACGAAACAAAAGAATGTTTTGTCAAGAGTCACTTTTAAGGAAAAACATAATCCAAGTGCAAGGGCAGCTCAAGAAACTCAGGAATGAAAATAGGATGAAGGAGATTAACCTTTTCATGTGTCAATACTTTGTTGGTGGTAACCACCTTGACAAGTCCAATATTATTGATCTGAATGATATCACATTCTTGGCTGATAAAAAGTTGGAGGAGATTACAAAGAAAATAGAAATGCTCCATGTCCAAGAGGTGACACCAACTACTGAAAATGAGGAGAAACCATGA 516 0.3837 MARKKVDLAYISNPKKRKEVLKKRKNGLLKKVDEITTLCGIEACAIIYSPDEPEPQVWSSDQGVESVIFKFRGVSELTRNKRMFCQESLLRKNIIQVQGQLKKLRNENRMKEINLFMCQYFVGGNHLDKSNIIDLNDITFLADKKLEEITKKIEMLHVQEVTPTTENEEKP* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1617 171 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Gso2g1617 171 Gene3D - 14 112 IPR036879 GO:0003677|GO:0046983
Gso2g1617 171 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso2g1617 171 Coils Coil 87 114 - -
Gso2g1617 171 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso2g1617 171 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 160 - -
Gso2g1617 171 SUPERFAMILY SRF-like 3 93 IPR036879 GO:0003677|GO:0046983
Gso2g1617 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Gso2g1617 171 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso2g1617 171 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso2g1617 171 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso2g1617 171 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1617 Gso-Chr2 37427815 37428476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1617 1 156 Type I MADS-box Gene Family AT5G48670 44.231 1.20e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso2g1617 SRF-TF 2.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1617 - - gmx:100813005 338.576