Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1582 ATGGGGAGAGGGAAGATTGAGATTAAGAAGATTGAGAATTTGAACAGCAGACAAGTTACCTTCTCCAAGAGGAGAAATGGGTTGTTGAAGAAGGCCAAAGAGTTGTCTGTTCTCTGTGATGCAGAGGTTGCTGTCATCATATTCTCCAGCACTGGCAAGCTTTATGAGTTCTCAAACACAAGCATGGAGCATACCCTTTCGAGGTACAGTAAAGGCGCAGAATCAGATTCTGCAGAGCAACCTATTGATGTGCCCCCAACAGATGTTATGGCTGTGGAGCCTGATACTAACCTTTTGATGGAGGAAATAACAAAGCTTCGATCAGCATACTTAAGGATGATGGGTAAGGAGCTTGATGGATTGAGCCTTAAAGAACTGCAACAACTAGAAAATCAACTAAGTGAAGGGATGCAATCTGTCAAAGACAAGAAGGAACAAGTACTTGTGGAACAGCTTAGGAAGTCCAGGATACAGGAGCAAAAGGCCATGCTGGAAAATGAAGTTCTGCGCAAACAGCTTGAGGAAATACAAAATAAAACAAAGTCACAGTTCCTTGAATTCAGCTCTTTGGATAGGACATTTTCCAAGAATGGTTCAAAATCCCTTTTCAATTGTGCTTCAGAGGAAAATGACCTTTCAGATACTTCCTTGCAGTTAGGGTTGTCAACAGATTATGGTCGCCAGAGGAAAGCATTGAAGATGGAACCTTGCAACGACTCAGGGAGTCAAGTGGCTTCACATTGA 744 0.4261 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTLSRYSKGAESDSAEQPIDVPPTDVMAVEPDTNLLMEEITKLRSAYLRMMGKELDGLSLKELQQLENQLSEGMQSVKDKKEQVLVEQLRKSRIQEQKAMLENEVLRKQLEEIQNKTKSQFLEFSSLDRTFSKNGSKSLFNCASEENDLSDTSLQLGLSTDYGRQRKALKMEPCNDSGSQVASH* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1582 247 Gene3D - 14 85 IPR036879 GO:0003677|GO:0046983
Gso2g1582 247 Coils Coil 123 146 - -
Gso2g1582 247 Coils Coil 154 179 - -
Gso2g1582 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso2g1582 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso2g1582 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gso2g1582 247 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso2g1582 247 PANTHER MADS BOX PROTEIN 1 225 - -
Gso2g1582 247 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Gso2g1582 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso2g1582 247 Pfam K-box region 97 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso2g1582 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso2g1582 247 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 225 - -
Gso2g1582 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso2g1582 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso2g1582 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1582 Gso-Chr2 34889451 34894220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1582 1 221 MADS-box Gene Family AT5G13790 48.889 2.38e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso2g1582 K-box 8.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1582 - - gmx:100792278 475.707