Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1577 ATGGAAACACATCCACACTATATTTCTAAAGCGTTTTCTCTCACTAACGTTAGGGTTAGGTTAGGTTTGGTTTGGTTTACGTCAATGGCTTCTTCTTCTTCCGATCCTGGCAAGTCCGAAGCTGACGGCAGTTCGGAGACTCTGTCGGAAGCAACCGCGGCGGCGAAGGATGGACAGTTACGGATGAAGAAGGCAAAGAAAGAGAGAGTGTGCACTGCGAAGGAGCGAATCAGCAAGATGCCTCCTTGCGCTGTGGGCAAACGCAGCTCCATTTACCGCGGCGTCACCAGGCATAGATGGACTGGTCGTTATGAAGCACATCTTTGGGACAAAAGTACCTGGAACCAGAATCAGAATAAGAAAGGAAAGCAAGTTTACTTGGGGGCATATGATGATGAAGAGGCAGCAGCTAGAGCATATGACCTTGCTGCTCTGAGATATTGGGGTCCGAGTGCTCTCATAAACTTTCCAGTGACTGATTATGCAAGAGATCTTGAAGAAATGCAGAATGTATCCAGAGAGGAATACCTTGCATCTTTACGGAGGAAGAGCAGTGGTTTTTCAAGAGGACTTTCCAAATACCGGGGACTCTCCAGTCGATGGAATCCAACATATGGTCGTATGGCTGGATCTGACTACTTCAACAGTAGATATTATGGTGAAGATTCAGCTGCAGAAACCAAATATCTAAGTAGTTTCTGCATAGAAAGAAAGATTGATTTAACAAGTTACATCAAATGGTGGGGGTCAAATAAAAGTCAGCAACCTGATTCTAGAGTAAGATTTTCAGATGTTAGAAAGCATGGTTTTGCTGGAGATTTTTGCATTGAACACAAAACATTGGAACAAAACGTCCATCCTTCAGAACCATACCAGTTGCTAGCATTAGGCATGCCCTGTGAAAGGATCAAACATGAACATTCTTCTGTCTCGGCTTTAAGTATTGTGTTACAATCAGCTGCTTACAAGAACTTGCAACAGAGAGCATCAACGAGACAGGAAAATAGCAATTATAATGACGAGAATGAAAATAAAGATACCATCATCAATAAGTTGGACCATGGGAAGGCAGCAGAGAAATCATTGAATAATGACAGTGGCAATGAAAGACTTGACATTGCAATGGGAATGAGTGGATCGCTGCCTCTTCAAAGAAATGTTTACCCACCGACATCGTTATTGATTGCTCCACTTTTGACTGCCTACAACACTGTTGATCCATCGGTAGATCCTGTTCTCTGGACGCCACAGGTTCCTATACTTTCTGCTGGCCTTTCTGGTGTAGCTGAGGTTGCGAAGACTGAGACCAGTTCAACGTACACCATTTTTCAGCCAGACGAGTGA 1344 0.439 METHPHYISKAFSLTNVRVRLGLVWFTSMASSSSDPGKSEADGSSETLSEATAAAKDGQLRMKKAKKERVCTAKERISKMPPCAVGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALRYWGPSALINFPVTDYARDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWNPTYGRMAGSDYFNSRYYGEDSAAETKYLSSFCIERKIDLTSYIKWWGSNKSQQPDSRVRFSDVRKHGFAGDFCIEHKTLEQNVHPSEPYQLLALGMPCERIKHEHSSVSALSIVLQSAAYKNLQQRASTRQENSNYNDENENKDTIINKLDHGKAAEKSLNNDSGNERLDIAMGMSGSLPLQRNVYPPTSLLIAPLLTAYNTVDPSVDPVLWTPQVPILSAGLSGVAEVAKTETSSTYTIFQPDE* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1577 447 SUPERFAMILY DNA-binding domain 90 158 IPR016177 GO:0003677
Gso2g1577 447 SMART rav1_2 91 163 IPR001471 GO:0003700|GO:0006355
Gso2g1577 447 MobiDBLite consensus disorder prediction 30 52 - -
Gso2g1577 447 CDD AP2 90 159 IPR001471 GO:0003700|GO:0006355
Gso2g1577 447 Pfam AP2 domain 91 149 IPR001471 GO:0003700|GO:0006355
Gso2g1577 447 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 28 442 - -
Gso2g1577 447 ProSiteProfiles AP2/ERF domain profile. 91 157 IPR001471 GO:0003700|GO:0006355
Gso2g1577 447 Coils Coil 48 68 - -
Gso2g1577 447 MobiDBLite consensus disorder prediction 30 59 - -
Gso2g1577 447 Gene3D AP2/ERF domain 91 159 IPR036955 GO:0003700|GO:0006355
Gso2g1577 447 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Gso2g1577 447 PRINTS Ethylene responsive element binding protein signature 139 159 IPR001471 GO:0003700|GO:0006355
Gso2g1577 447 PANTHER BNAA03G19580D PROTEIN 28 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1577 Gso-Chr2 34547513 34553303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1577 52 445 AP2-EREBP Transcription Factor Family AT2G41710 59.268 1.62e-144 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso2g1577 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1577 K09285 - gmx:100795084 880.552