Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1557 ATGGGAACTCCAGAATTCCCAGATCTGGGAAAGCACTGTGCTGTGTCCGATTGCAAGCTCATCGATTTCTTGCCCTTCACCTGCGATCGCTGCGACCAGGTGTATTGTTTGGAGCACAGAAGTTATATTAAACATTTGTGTACAAAAGCTGACAAGCAAGATGTCACAGTAGTTATATGTCCACTTTGTGCCAAAGGAGTTCGCCTAGTTCCTGATCAAGATCCAAACATAACTTGGGAGAATCATGTCAACACCGAGTGCGACCCATCGAATTACGAGAAAGTCACAAAGAAGAAAAAATGCCCTGTCCCTGGATGCAGAGAGATATTAGTATTCTCAAACACAATTAAGTGCAGGGACTGCACAGTAGAGCATTGTTTAAAGCATCGGTTTGGACCTGATCATAAATGTCCTGGTCCCAAAAATGTGGAATCAAGTTTTTCATTCATGAATCTTTTGAATGGGAGTAAAAAGCAGGAGTCCAAACCCAAGTCAAGCGCAACCACATCATCTAAATGGAGTACAAGCTTTCTTAATGCGGCTTCTAACATTCGAGCTTCGGCTGAGGCTGGTGTCTCAAAGTTGAGTGCCTGGCAGACAGCAAGGGGTGGGGTGGGTCAGAGCCATAGCAGTGGTCAAGTGGAGCAATGCCCTCAGTGTGGTGCCAAGTTTTCCTCAGTTACTACTTTGGTGGACCATGTGCAAAAAGTTCACGAGAGGAGTGGCAACCGATCTGGAGCGAAGGTTACAATTGATGTTTGTCCAAAATGTAGTAGAGGATTTCGAGATCCTGTGGCCCTAGTGGAACATGTTGAGAAGGATCACGGTGGAAGTTCTAGATCATAG 846 0.4539 MGTPEFPDLGKHCAVSDCKLIDFLPFTCDRCDQVYCLEHRSYIKHLCTKADKQDVTVVICPLCAKGVRLVPDQDPNITWENHVNTECDPSNYEKVTKKKKCPVPGCREILVFSNTIKCRDCTVEHCLKHRFGPDHKCPGPKNVESSFSFMNLLNGSKKQESKPKSSATTSSKWSTSFLNAASNIRASAEAGVSKLSAWQTARGGVGQSHSSGQVEQCPQCGAKFSSVTTLVDHVQKVHERSGNRSGAKVTIDVCPKCSRGFRDPVALVEHVEKDHGGSSRS* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1557 281 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Gso2g1557 281 ProSitePatterns Zinc finger C2H2 type domain signature. 217 238 IPR013087 -
Gso2g1557 281 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 280 - -
Gso2g1557 281 Gene3D Classic Zinc Finger 197 278 - -
Gso2g1557 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 280 IPR013087 -
Gso2g1557 281 ProSitePatterns Zinc finger C2H2 type domain signature. 254 275 IPR013087 -
Gso2g1557 281 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Gso2g1557 281 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Gso2g1557 281 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Gso2g1557 281 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270
Gso2g1557 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 243 IPR013087 -
Gso2g1557 281 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Gso2g1557 281 Pfam C2H2-type zinc finger 216 238 - -
Gso2g1557 281 Gene3D - 2 60 IPR035896 -
Gso2g1557 281 Gene3D - 86 174 IPR035896 -
Gso2g1557 281 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 280 - -
Gso2g1557 281 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Gso2g1557 281 SUPERFAMILY AN1-like Zinc finger 93 144 IPR035896 -
Gso2g1557 281 SMART c2h2final6 215 238 IPR013087 -
Gso2g1557 281 SMART c2h2final6 252 275 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1557 Gso-Chr2 33415317 33419209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1557 1 281 C2H2 Transcription Factor Family AT2G41835 62.898 1.44e-126 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso2g1557 zf-AN1 4.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1557 - - gmx:100786272 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1172 19 40103562 40105625 Gso2g1557 2 33415317 33419209 PCT
Gso3g1174 3 37269880 37271979 Gso2g1557 2 33415317 33419209 PCT
Gso2g1557 2 33415317 33419209 Gso19g1172 19 40103562 40105625 PCT
Gso2g1557 2 33415317 33419209 Gso3g1174 3 37269880 37271979 PCT