Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1555 ATGGGTAACTGTTGCGTTTTGCCATCCCGTCAGATCAGAAAAGAAAAAAAACACAAGAAGAAACGGAATCCCTATGAGGACGGGCGGGGGAAGAAGCTGGTGGTGCTGACGGAGCCCACGGGCCGGGACATCGGCCTGCGGTACGACCTGGGCCGGGAGCTGGGACGCGGCGAGTTCGGGGTGACGTACCTGTGCCGCGACAGGGAAACGAAGGAGGAATTAGCATGCAAGAGTATTTCCAAGAAGAAGCTACGAACGGCTATTGATATTGAAGACGTGAGGAGGGAGGTGGAGATCATGCGGCACCTGCCCAAACACCCGAACGTTGTGTCGTTGAAGGACACGTACGAGGACGACGATGCCGTTCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGTATCGTTGCGCGCGGCCACTACACCGAGCGCGCTGCCACCACTGTCACCAGAACCATCGTCGAAGTCGTGAAGGTGTGCCACGAGCATGGTGTGATGCATCGTGATCTCAAACCCGAGAACTTTTTGTTTGGAAACAAGAAGGAAACAGCACCCTTGAAAGTTATTGACTTTGGATTGTCGGTTTTATTCAAACCAGGTGAAAGATTCAATGAGATAGTTGGAAGCCCATATTACATGGCTCCTGAGGTATTAAAGCGTAATTATGGCCCTGAAATAGATATCTGGAGTGCTGGAGTAATTCTCTACATATTACTTTGTGGCGTTCCACCGTTTTGGGCAGAAACTGAACAGGGAGTTGCTCAAGCAATTATTCGATCTATTGTTGATTTTAAAAGGGAGCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTCGATCCTGACCCTAAGCGCCGGCTTACTGCACAAGAAGTGTTAGATCATCCATGGTTACAGAATGAAAAGAAAGCTCCTAATGTTTCATTAGGAGAAACTGTTAGATCAAGGCTCATGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCCTTGAGGGTGATTGCAGAGTATTTGTCCTTAGAAGAAGCTGCTGGAATAAAAGAGGGATTCCAGCTGATGGATACAAGCAATAAAGGCAAGATTAGCGTCGATGAGCTGCGTGTAGGGTTGCATAAACTAGGTCACCAAATTCCTGATGGGGATGTCCAAATACTTATGGATGCTGGTGATGTAGACAACGATGGGTACATAGATTATGGCGAGTTTGTTGCCATTTCCATTCATCTGAGAAAGATAGACAATGATGAGCACCTTCACAAAGCCTTCCAATTTTTTGATGAGAACCAAAGTGGATATATTGAAATTGAGGAGTTACATAATGTCTTAGCTGATGAGATTGAAACAAACAGTGAAGAAGTCATCAATGCAATTATCCATGATGTGGACACAGATAAGGATGGAAGAATAAGTTATGAGGAATTTGCCGCGATGATGAAGGCAGGCACAGATTGGAGGAAAGCATCAAGGCAGTATTCAAGAGAGAGGTTCTCTAGCCTAAGTCAGAAATTGATCAAGGACGGGTCTTTGAAACTAAACAATGATGACGGTAGATGA 1578 0.462 MGNCCVLPSRQIRKEKKHKKKRNPYEDGRGKKLVVLTEPTGRDIGLRYDLGRELGRGEFGVTYLCRDRETKEELACKSISKKKLRTAIDIEDVRREVEIMRHLPKHPNVVSLKDTYEDDDAVHLVMELCEGGELFDRIVARGHYTERAATTVTRTIVEVVKVCHEHGVMHRDLKPENFLFGNKKETAPLKVIDFGLSVLFKPGERFNEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSIVDFKREPWPKVSDNAKDLVKKMLDPDPKRRLTAQEVLDHPWLQNEKKAPNVSLGETVRSRLMQFSVMNKLKKRALRVIAEYLSLEEAAGIKEGFQLMDTSNKGKISVDELRVGLHKLGHQIPDGDVQILMDAGDVDNDGYIDYGEFVAISIHLRKIDNDEHLHKAFQFFDENQSGYIEIEELHNVLADEIETNSEEVINAIIHDVDTDKDGRISYEEFAAMMKAGTDWRKASRQYSRERFSSLSQKLIKDGSLKLNNDDGR* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1555 525 CDD STKc_CAMK 47 305 - -
Gso2g1555 525 ProSiteProfiles EF-hand calcium-binding domain profile. 349 384 IPR002048 GO:0005509
Gso2g1555 525 ProSitePatterns EF-hand calcium-binding domain. 470 482 IPR018247 -
Gso2g1555 525 ProSiteProfiles EF-hand calcium-binding domain profile. 421 456 IPR002048 GO:0005509
Gso2g1555 525 ProSiteProfiles EF-hand calcium-binding domain profile. 385 420 IPR002048 GO:0005509
Gso2g1555 525 Gene3D Phosphorylase Kinase; domain 1 50 133 - -
Gso2g1555 525 PANTHER SERINE/THREONINE-PROTEIN KINASE 11 503 - -
Gso2g1555 525 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 11 503 - -
Gso2g1555 525 Pfam Protein kinase domain 48 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1555 525 SUPERFAMILY Protein kinase-like (PK-like) 47 316 IPR011009 -
Gso2g1555 525 ProSiteProfiles Protein kinase domain profile. 48 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1555 525 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Gso2g1555 525 SMART efh_1 353 381 IPR002048 GO:0005509
Gso2g1555 525 SMART efh_1 461 489 IPR002048 GO:0005509
Gso2g1555 525 SMART efh_1 389 417 IPR002048 GO:0005509
Gso2g1555 525 SMART efh_1 425 453 IPR002048 GO:0005509
Gso2g1555 525 Pfam EF-hand domain pair 366 412 IPR002048 GO:0005509
Gso2g1555 525 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Gso2g1555 525 SUPERFAMILY EF-hand 330 499 IPR011992 -
Gso2g1555 525 ProSitePatterns EF-hand calcium-binding domain. 398 410 IPR018247 -
Gso2g1555 525 Gene3D Transferase(Phosphotransferase) domain 1 134 315 - -
Gso2g1555 525 Gene3D - 316 489 - -
Gso2g1555 525 Pfam EF-hand domain pair 424 487 IPR002048 GO:0005509
Gso2g1555 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Gso2g1555 525 CDD EFh 425 487 IPR002048 GO:0005509
Gso2g1555 525 SMART serkin_6 48 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1555 525 ProSiteProfiles EF-hand calcium-binding domain profile. 457 492 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1555 Gso-Chr2 33194060 33201751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1555 1 523 EF-hand Containing Proteins AT5G19450 74.484 0.0 846
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso2g1555 Pkinase 3.4e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1555 K13412 - gmx:100815320 1051.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1176 19 40141741 40146490 Gso2g1555 2 33194060 33201751 PCT
Gso3g1177 3 37308091 37312631 Gso2g1555 2 33194060 33201751 PCT
Gso2g1555 2 33194060 33201751 Gso19g1176 19 40141741 40146490 PCT
Gso2g1555 2 33194060 33201751 Gso3g1177 3 37308091 37312631 PCT