Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1554 ATGGAGAAGATGGCAGCACTCACTACTAATATTATCCACACCCCTCTCTTACCCAACAATACCACTCTTCCAAAGACTTCATCTTTTCAACCCTTCTTCTCTAACCAACTACTTGGCCTCCCCTTATCTTCTTCTTCTTCTTTAACCGTCGCTAAACGGTTCTCTTGCAGGCCCATCAAGTGTTCTGTTTCTGAAGCCACAGAGCCCAAAACAGAGAAGAAGAGGCAATTGCTGAGAAGAGGGGACGTGAGAAACATAGCCATTGTTGCTCACGTTGACCATGGGAAAACCACTCTCGTTGATGCCATGCTCAAACAAACTAAGGTATTTCGTGATAATCAATTTGTTCAGGAAAGGATAATGGACTCGAATGATTTGGAGCGCGAAAGAGGAATTACAATACTGAGTAAAAATACATCTGTTACTTATAAAGATGCGAAGATTAATATAATAGATACTCCGGGTCACTCTGATTTTGGTGGTGAAGTGGAGCGCATCTTAAATATGGTGGAAGGGATCCTTCTAGTGGTAGATTCTGTTGAAGGGCCAATGCCACAGACAAGATTTGTCTTGAAGAAGGCTTTAGAGTTTGGTCACTCAGTTGTCGTGGTTGTGAATAAAATAGATAGGCCTTCTGCTCGCCCAGAATATGTCGTCAACTCTACTTTTGAACTCTTCATTGAACTAAATGCAACAGATGAACAGTGTGACTTTCAAGTAATATATGCAAGTGGTATAAAAGGGCATGCAGGGTTGACTCCTGAAAATCTGGCAGAAGACCTTGGCCCATTGTTTGAATCCATCATTAGATGCATCCCTGGACCACATATTGACAAAGATGGTGCCCTTCAAATGCTTGTTACAAATATTGAGTATGATGAACATAAAGGGCGTATAGCAATTGGGCGCGTGCAAGCTGGAGTCTTAGAAAAAGGCATGGATGTCCGAGTATGTACTTCAGATGATTCATGTAGATATGGAAGAGTTAGTGAGCTTTATGTGTATGACAAATTCAATAGGGTCCCTGCAGATAAGGTGGAGGCAGGTGATATATGTGCAGTTTGTGGAATTACTGATATTCAGATTGGGGAGACTATTGCTGATAAAGTATCTGGGAAGCCACTACCTTCCATCAAGGTGGAAGAACCGACAGTGAAAATGTCTTTCTCCATAAACACTTCACCTTTTGTTGGCCGTGAGGGAAAGTATGTTACTAGTAGGAATTTAAGGGACAGGCTTTATCGTGAACTTGAGCGGAATCTGGCTATGAAAGTCGAAGATGGTGAAACAGCTGATACATTTGTTGTCAGTGGGCGAGGAACTTTGCATATCACCATACTCATAGAAAATATGCGAAGAGAAGGATATGAATTCATGGTTGGGCCTCCCAAAGTTATCAACAAGAAGGTGAATGAACAACTGTTGGAGCCGTATGAGATTGCTACTGTGGAGGTACCAGAAGAGCACATGGGAGCTGTTGTTGAACTTCTCGGCAAGAGACGAGGACAGATGTTTGATATGCAAGGAGTTGGATCGGAAGGAACTACACTACTCAAATATAAGATCCCAACCCGTGGCCTTCTTGGTTTGCGGAACTCAATTTTAACTGCCTCCCGAGGGACAGCTATTCTCAACACTGTCTTTGATAGCTATGGGCCATGGGCTGGTGACATTAGTACTCGGGATCAAGGCTCATTGGTTGCTTTTGAGGATGGAACAAGTACTTCTTATGCAATCTCTAGTTCACAGGAGAGGGGACAGATGTTTATTGGTCCTGGAGTGGATGTTTATAAAGGTCAAATTGTTGGCATCCATCAGCGACCTGGGGACTTGTCCTTGAATGTTTGCAAGAAGAAAGCTGCAACCAACGTACGTTCCAACAAGGAACAAACAGTGATTCTTGATACGCCATTGGACTATAGTTTGGATGACTGCATTGAATACATCCAAGAAGATGAACTAGTAGAGGTCACCCCCGCAAGTATCCGAATGTGCAAGAATCCAAAAATTACAAACAAGAAAACAAGGTAG 2031 0.4274 MEKMAALTTNIIHTPLLPNNTTLPKTSSFQPFFSNQLLGLPLSSSSSLTVAKRFSCRPIKCSVSEATEPKTEKKRQLLRRGDVRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVTYKDAKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHSVVVVVNKIDRPSARPEYVVNSTFELFIELNATDEQCDFQVIYASGIKGHAGLTPENLAEDLGPLFESIIRCIPGPHIDKDGALQMLVTNIEYDEHKGRIAIGRVQAGVLEKGMDVRVCTSDDSCRYGRVSELYVYDKFNRVPADKVEAGDICAVCGITDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFVVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNEQLLEPYEIATVEVPEEHMGAVVELLGKRRGQMFDMQGVGSEGTTLLKYKIPTRGLLGLRNSILTASRGTAILNTVFDSYGPWAGDISTRDQGSLVAFEDGTSTSYAISSSQERGQMFIGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNVRSNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPASIRMCKNPKITNKKTR* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1554 676 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 81 276 IPR000795 GO:0003924|GO:0005525
Gso2g1554 676 CDD TypA_BipA 82 275 - -
Gso2g1554 676 Gene3D Translation factors 277 377 - -
Gso2g1554 676 Gene3D bipa protein 561 669 IPR042116 -
Gso2g1554 676 CDD BipA_TypA_II 283 376 - -
Gso2g1554 676 TIGRFAM small_GTP: small GTP-binding protein domain 84 223 IPR005225 GO:0005525
Gso2g1554 676 SUPERFAMILY Translation proteins 229 376 IPR009000 -
Gso2g1554 676 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 122 137 IPR031157 -
Gso2g1554 676 CDD BipA_TypA_C 476 555 IPR035651 -
Gso2g1554 676 Pfam Elongation factor Tu domain 2 297 366 IPR004161 GO:0005525
Gso2g1554 676 SUPERFAMILY EF-G C-terminal domain-like 381 465 IPR035647 -
Gso2g1554 676 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 83 675 IPR006298 GO:0005525
Gso2g1554 676 PRINTS GTP-binding elongation factor signature 85 98 IPR000795 GO:0003924|GO:0005525
Gso2g1554 676 PRINTS GTP-binding elongation factor signature 129 137 IPR000795 GO:0003924|GO:0005525
Gso2g1554 676 PRINTS GTP-binding elongation factor signature 149 159 IPR000795 GO:0003924|GO:0005525
Gso2g1554 676 PRINTS GTP-binding elongation factor signature 201 210 IPR000795 GO:0003924|GO:0005525
Gso2g1554 676 SUPERFAMILY EF-G C-terminal domain-like 476 591 IPR035647 -
Gso2g1554 676 SMART EFG_C_a 473 562 IPR000640 -
Gso2g1554 676 Gene3D - 467 560 - -
Gso2g1554 676 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 63 673 - -
Gso2g1554 676 Pfam Elongation factor G C-terminus 473 559 IPR000640 -
Gso2g1554 676 PANTHER BNAC09G43450D PROTEIN 63 673 - -
Gso2g1554 676 CDD BipA_III 383 461 - -
Gso2g1554 676 Gene3D - 81 276 IPR027417 -
Gso2g1554 676 Gene3D Elongation Factor G (Translational Gtpase), domain 3 384 667 - -
Gso2g1554 676 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 284 IPR027417 -
Gso2g1554 676 Pfam Elongation factor Tu GTP binding domain 83 273 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1554 Gso-Chr2 33178670 33186868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1554 83 210 Eukaryotic Initiation Factors Gene Family AT3G22980 44.615 6.48e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1554 K06207 - gmx:100785222 1323.92