Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1546 ATGGAAGGTTGCAAAATGTTTCCACCAAAGCCATGGAAGAAAGGGCCAACAAGGGGCAAAGGTGGCCCTCAAAACTCCTCATGTGAGTATAGAGGTGTTAGGCAAAGAACATGGGGCAAATGGGTGGCTGAGATAAGAGAGCCAAAGAAGAGAACAAGGCTCTGGCTTGGCTCTTTTGCCACAGCAGAAGAAGCTGCCTTGGCCTATGATGAGGCTGCAAGGAGACTCTATGGCCCTGATGCTTACCTTAACCTCCCCCACATGATGATGCAACCAACTATCTTCACAAATTCCACCGCCACCAAATCTCACAAGTACTTCAAGTGGTTCCCTTCCAAGAACTTCATTTCAATGTTTCCCTCAAGAGGTGGATTGCTCAACCTCAATGCTCAACCTAGTGTCCATGTCATCCATCAGAAGCTGCAAGAGCTTAAGCAAAATGGGGTGGTTGCAACAAGTCAAACTCAATCATCACCACATACTAGTTCATTGTCCACTCATCCAAAGGTGGTGGACCTTGAGAACTTTGACATCCAAAACCATGCAGAAATTCTTCCTCCACTGCAAGAGGGTAATTCTCGAGTTTCATCACAGAAAACTATTGTTGGTGATTTTGAGGAGAAGCCTCAGATTGACCTACTTGAGTTTCTTCAGCAGATGGGAATACTAAAGGAAGAAAGAGAGGAAGAGAAAACTAATAGCTCAGGAAGTTCAACAACAGTGTCTGAAGCTGCATCAAGAGATGAGAGCAGTGAACAAGCAGGAGTGTTTTCTGACATGAGTAGTGTTAACTGGGAGGAATTGATTGAGATGCATGAGCATGACCATGGAGTTGCAGATAGTTTTTATCGTGCATCAGAAGAAATCCAGTTTGAAGCATATGACATAAACGAGGACCTTACTTTCTCCCCTTCCATTTGGAACTATTAA 930 0.443 MEGCKMFPPKPWKKGPTRGKGGPQNSSCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAALAYDEAARRLYGPDAYLNLPHMMMQPTIFTNSTATKSHKYFKWFPSKNFISMFPSRGGLLNLNAQPSVHVIHQKLQELKQNGVVATSQTQSSPHTSSLSTHPKVVDLENFDIQNHAEILPPLQEGNSRVSSQKTIVGDFEEKPQIDLLEFLQQMGILKEEREEEKTNSSGSSTTVSEAASRDESSEQAGVFSDMSSVNWEELIEMHEHDHGVADSFYRASEEIQFEAYDINEDLTFSPSIWNY* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1546 309 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Gso2g1546 309 CDD AP2 28 87 IPR001471 GO:0003700|GO:0006355
Gso2g1546 309 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Gso2g1546 309 MobiDBLite consensus disorder prediction 148 167 - -
Gso2g1546 309 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Gso2g1546 309 MobiDBLite consensus disorder prediction 1 28 - -
Gso2g1546 309 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Gso2g1546 309 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Gso2g1546 309 MobiDBLite consensus disorder prediction 234 257 - -
Gso2g1546 309 MobiDBLite consensus disorder prediction 225 257 - -
Gso2g1546 309 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Gso2g1546 309 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Gso2g1546 309 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 306 - -
Gso2g1546 309 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1546 Gso-Chr2 32902733 32903949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1546 10 309 AP2-EREBP Transcription Factor Family AT3G57600 48.675 3.17e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso2g1546 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1546 - - gmx:100808363 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1183 19 40250849 40252272 Gso2g1546 2 32902733 32903949 PCT
Gso3g1182 3 37387572 37391098 Gso2g1546 2 32902733 32903949 PCT
Gso2g1546 2 32902733 32903949 Gso19g1183 19 40250849 40252272 PCT
Gso2g1546 2 32902733 32903949 Gso3g1182 3 37387572 37391098 PCT