Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1542 ATGGCAGACCCTTACTCCAATTTCTTCTCACCAGGTAGTTTCTTCCACCACTATCCTTCTCCAAACCCTTCACCCCACCACCATCCCTATGCTCACAACTTCCTCAACCAAAATGGTTCCAACATCAATAACCACAACACCTTTTTCCACTTCCACCACTTTCAAACCACTATTTGTTCTTCTTCACCTCCTTCCCCTCCCTTGAGAGAAGCCCTTCCTCTTCTAACTCTCAGCCCAAGAAATGAAGAGGAACAAGAAGAGGATGACCAAGATCAAGATCAGGAGATTCTTCAGGAAAATATTTGCACTGCCATGGATGTGGAAGAGAATTACAACAACAGAACCCTTCACCTTCACCCAAAAGGGGAGGAACAAGATCAAGAAGATACTGATGAAAGTGTCACTGTTGCACTGCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATAGCTTCTGTTCTTTCTTCAGCAGCTTGTTCTACAGACAAAGAACAACAAGGAGGAGATGGAGTTGGTAATAACAACAGTAATAATGGGAGTGAGGATTTTTCTTCTTCAGGGTTCTTGTCTAACAGGCTCAACAAGGGACAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCTTGTCCCGTTTGTTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGTATGCTAAGGCTTCCATGCTATTGCTGTTCCCCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCCCTCAAAGACTTCAGAACCCTCCAAACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCCTTTGCTGTGAGGGGTGATTGGAGAACACATGAGAAGAACTGTGGCAAGCTTTGGTATTGCATCTGTGGATCTGATTTCAAGCACAAGAGGTCCCTTAAGGATCACATCAAAGCCTTTGGAAGTGGCCATGCAGCTTACGGGATTGATGGATTTGAAGAAGAAGAAGAGCCTGCATCTGAAGTAGAACAAGATAATGACTGA 1116 0.4552 MADPYSNFFSPGSFFHHYPSPNPSPHHHPYAHNFLNQNGSNINNHNTFFHFHHFQTTICSSSPPSPPLREALPLLTLSPRNEEEQEEDDQDQDQEILQENICTAMDVEENYNNRTLHLHPKGEEQDQEDTDESVTVALHIGLPSPSAAEIASVLSSAACSTDKEQQGGDGVGNNNSNNGSEDFSSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDND* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1542 371 PANTHER ZINC FINGER PROTEIN WIP2 33 371 IPR043584 GO:0003700|GO:0010468
Gso2g1542 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 297 317 IPR013087 -
Gso2g1542 371 SUPERFAMILY beta-beta-alpha zinc fingers 279 317 IPR036236 -
Gso2g1542 371 ProSitePatterns Zinc finger C2H2 type domain signature. 215 235 IPR013087 -
Gso2g1542 371 Coils Coil 80 100 - -
Gso2g1542 371 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 33 371 - -
Gso2g1542 371 Gene3D Classic Zinc Finger 212 235 - -
Gso2g1542 371 SMART c2h2final6 297 317 IPR013087 -
Gso2g1542 371 SMART c2h2final6 213 235 IPR013087 -
Gso2g1542 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 240 IPR013087 -
Gso2g1542 371 MobiDBLite consensus disorder prediction 158 187 - -
Gso2g1542 371 Gene3D Classic Zinc Finger 275 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1542 Gso-Chr2 32749561 32752342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1542 1 371 C2H2 Transcription Factor Family AT3G57670 60.859 1.21e-145 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso2g1542 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1542 - - gmx:100783088 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1187 19 40296414 40299382 Gso2g1542 2 32749561 32752342 PCT
Gso3g1190 3 37472012 37475110 Gso2g1542 2 32749561 32752342 PCT
Gso2g1542 2 32749561 32752342 Gso19g1187 19 40296414 40299382 PCT
Gso2g1542 2 32749561 32752342 Gso3g1190 3 37472012 37475110 PCT