Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1538 ATGGATGGCTCTGCGGATAGATACAAAGCTCAATTGGTTGCCAAAGGGTATACTCAACAAGCTGGAATCAATTTCTCTGATACTTTTTCTCTAGTGGCCAAGCTTACCACTGTGAGAGTTTTGCTCTGTGTTGTTGCTACTAGAAACTGGTGCCTTCTCCAATTAGATGTTAATAATGCTTTTTTGAATGGAGATTTGTTGGAAGAAGTTTATATGGAACTTCCCAAAGGTTACAAGTCAAAAAATTCTTCCTTGTATCATGAGTGCCTTAAGAACCACATCGTCAAAATTGGCGGCCACACACTTGATGGATGCATCAAGTTCTTGCCTCTGGGCGAGGAGGGAACCCTGGACGCGCTAAAATGCCTCGTGTGCAACTGCCACCGAAACTTCCATCGTAAGGAGACCCCCAATGACACCTACATGGTGCCTTACTACCACCACTCGCCGTTGCCGTTGGCAGCGTACAATGGGGAGCAAGTGGGCTACCCCCGTGTGCAAGGGCAACAATGCACCACACTGGCACTCCCCTCCAGATCAAGGGGCAGTGGTGGGGCCCAGTCCTCAAGGGAGGACATGGAGGCAGTGTCAGACCCAACGAGTGGTGCCACTCCTCATGGCGGGTCCAGCAAGAAGCGTTTCAGGACTAGGTTCACCCAAGAGCAAAAGGAGAAGATGTTGGCCTTTGTAGAAAAGCTTGGTCGGAGGATTCTTAAGCACAATGAGAGTGATGTGCAGGAGTTTTGTGCCCAAAGTAGCGTCCAGCCTCATGTGCTTAAGGTGTGGGTGCACAACAACAAGCACACCTTGGGTAAGAAGCCCTAG 825 0.4958 MDGSADRYKAQLVAKGYTQQAGINFSDTFSLVAKLTTVRVLLCVVATRNWCLLQLDVNNAFLNGDLLEEVYMELPKGYKSKNSSLYHECLKNHIVKIGGHTLDGCIKFLPLGEEGTLDALKCLVCNCHRNFHRKETPNDTYMVPYYHHSPLPLAAYNGEQVGYPRVQGQQCTTLALPSRSRGSGGAQSSREDMEAVSDPTSGATPHGGSSKKRFRTRFTQEQKEKMLAFVEKLGRRILKHNESDVQEFCAQSSVQPHVLKVWVHNNKHTLGKKP* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1538 274 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 86 135 IPR006456 -
Gso2g1538 274 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 79 273 - -
Gso2g1538 274 Gene3D - 196 271 - -
Gso2g1538 274 MobiDBLite consensus disorder prediction 175 214 - -
Gso2g1538 274 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 79 273 - -
Gso2g1538 274 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 6 83 IPR013103 -
Gso2g1538 274 Pfam ZF-HD protein dimerisation region 85 136 IPR006456 -
Gso2g1538 274 SUPERFAMILY Homeodomain-like 198 272 IPR009057 -
Gso2g1538 274 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 211 267 IPR006455 -
Gso2g1538 274 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 86 135 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1538 Gso-Chr2 32561674 32586082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1538 86 270 ZF-HD Transcription Factor Family AT4G24660 49.206 7.15e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso2g1538 RVT_2 1.5e-21 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1538 - - gmx:100801455 560.066