Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1537 ATGGAGAGTAGTGGCAAGATGGAAGACTATGAAGTGATCCAGCAAATTGGAAGAGGAGCACTTGGTGCAACTTTTCTTGTTCTACACAAGATTGAGAATAAGAGGTATGTGCTGAAGAAAATTCGCTTGGCCAAGCAAGCAGACAAGTCCAAAGTGACAGCACAACAAGAGATGGACCTAATAGCAAAACTACATTACCCATATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGTAAAGACAGATGACTACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCTGCAAATATAAAGAAAGCTCGGGGATCTTATTTTTCAGAGGAGAAAGTTTGCAAGTGGTTGACTCAGTTGTTACTGGCTGTGGACTACCTTCACTCCAATCGGGTACTCCATAGAGATATCAAGTGTTCCAACATATTCCTTACCAAAGAAAATAACATTCGGCTAGGTGAATTTGGACTTGCAAAGCTTCTTAATACTGAAGACCTTACTTCCCCGGTTGTTGGAACTCTAAACTACATGTGTCCTGAGGCCTTTGCTGGTATGCCTTATGGTTATAAATCTGATATGTGGTCACTCGGTTGCTGCATGTTTGAAATTGTTGCACATCAACCGGCATTTCGTGCTCCAGACAGGGCTGGACTTATCAATAAAATAAATAGATCATCCATATCTCCACTGCCAATTGTTTACTCTTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACATAGACCAACAGCATCTGAATTATTAAAGAATCCTCATTTACAACCTTATGTTCTACGCTGTCGTAATGCATCATCTATTTTTCTACCAGTACATCTTATAAATAGTAACTCAAAGGATAAAACAAAAACCAAATCTAGTAGTGGTAGCAAAGACCATTGGGAAAGGGAGGCAGCATTGGCTGGATTGGTAAATCGTTTGGATCGACTTTATCCATTAGAGGGAAATGGAGATGTACAGTCACGGAATTGGCATAATGATGGCAAGCTAGCAGTGTCAACCAGTGCAGAAGACAACCTTGAGACTAAAATGGTTGATTTGACCAGCTATACTGTGGAGTTTTCTACTAGTATTAGCGGCTCGAAAGATGGATCAACAACATCTGAATCAACTGTCTGCAGTGTGTGCAAGGAAGGAGACTCTAAAAATAGACTTACAAGGGACACAGCTGACAGTGAGATCACTTCAAAGAGTACAATGGATTCTGGGCTTGAAGAACAAGGACTTGATTGTCACAAGTCATATGCAATTGACATAAATACGGTGATTAATAAAGTTGAAGATACTTTTTCCAATGAAGATTTCAATACAGATGAAGCACTTAGTGAAGGTGTCAAACCTGAGGACTCCAGTAAATCAATAATGTCCAGTGAAGACAGCAACGGTAATGATAAAGATGAGTTAATTGATGAGATCACATCAAAGAGTACTCTAGATTCTGTGCATGAAAAACAAGGATTTACAGCTGAACATTTTCAGAAGTCAGATGTGATTGACACAAGTGCAGTGTCTACAAAGATTGAAGATAATTTTTTCAGTGAAGATAGAACAGAAGCAGAGAGGGAAAATGCCAAACCTGAGGACTCCAGAAAATCAATAGTGTCAAGTGAAAACAGCGATGTTAAGGATAATGAGGGATCCATTAATGAGATCACTTCAACGAGTATGCTAGATTCTGTGCATGAAGAACAAGGATTTACAGCTGAACATTTTCCGAAGTCAGATGGGATTGACACAAATGCAGTGGCTATAAAAGTTGAGGATAATTTTTCCAATGAAGGTTTTGACCAAACAGAAACAGAGAGGGAAAATGCCAAACCTGATGACTCCCGAAAATCAGTAGTTTCCAGTGAAAACAGTGATGGTAATGATAACGATGGGTCCATTGATGAGAACACATTAAAGAGTACGCTCAATTCTGTGCATGAAGAACACGAATTTACCGCTGAACATTTTCTGAAGTCAGATGTGATTGACCCAAATGCAGTGGCTTCAAAAGTTGAAGATAATTTTTCCAATGAAGGTTTTGACCAAACTGAAACAGAGAGGGAAAATGCCAAACCTGATGACTCCAGAAAATCAATAGTGTCCAGTGAAAACAGCGACGGTAATGATATTGTTGCTGTTGATGAGACCACATTAAAGAGTATGCTCAATTATGTGCATGAAGAGCGAGGGTTTACAGCTGAACTTGTTCAAAAGTCAGATGTTGAAATAAATGCAGCGGCTTCAAAAGTTGAAGACAAATTTTCTAATGAAGGATTTGATAAGGCTGAAGCACAGAGGGAAGATGCCAAACTTGAGAGCTCTAGTAAATCAATAATTTCCTGTGAAAACAGAAACGATAATGATGACTATGGATCTGGCTATGAGATCACATCAAACAGTATGCTAGATTCTGTAGGTGAAGAAAAAAGACTTCCTGCTGAACTCTTTCAGAAGTCTGATGCAATTGACATAAATGCAGTGACTACAGAAGATGAAGATAAACTTTCCAAAGAAGGTTTTGATAGAGCTGAAACACAAGAGAAAGATGATAAACCTGAGGACTCCAGTAACTCATTGTCTAGTGAAGACAGCAACAGCAACGATAAAGAGGGGTCCATTGATGAGGAAAGGTCATCACCAATTGCACATGCGGTTAAGGTTGAGCATGACACTGACACTGGAAACAGCTTGAAGGAAAATGAAAACCCTAAAGTGTTGACAGAAGACTCATGCATGGACAGCTTGGCTTCTGAGAGTAATGAAATGCGTCCAGGTAAGGATGAAGGCCAAGCAGATACACACACAATCAGTTGTTCAACGCATAAAGAAGTTGACAATGCTGTCGTGGCTGATAAGCCACCAAATGGCGTTTCATTAAGGACACGCATATCAAGAGGTGGTGATAATACTTGCCATCAAAGAGCTGATGCTCTGGAATCTCTGCTCGAGTTATGTGCGCAGCTACTTCAGCAAGGAAAGCTTGAAGAGCTTGCTGCTGTGCTGAGACCATTTGGAGAAGATGCTGTATCTGTATCATCCAGAGAAACAGCAATATGGCTTACAAAAAGCCTGGTGGCCTCACAAAATCTTAATCCTGAGATATAG 3132 0.4004 MESSGKMEDYEVIQQIGRGALGATFLVLHKIENKRYVLKKIRLAKQADKSKVTAQQEMDLIAKLHYPYIVEYKDAWVEKVKTDDYICIITGYCEGGDMAANIKKARGSYFSEEKVCKWLTQLLLAVDYLHSNRVLHRDIKCSNIFLTKENNIRLGEFGLAKLLNTEDLTSPVVGTLNYMCPEAFAGMPYGYKSDMWSLGCCMFEIVAHQPAFRAPDRAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTASELLKNPHLQPYVLRCRNASSIFLPVHLINSNSKDKTKTKSSSGSKDHWEREAALAGLVNRLDRLYPLEGNGDVQSRNWHNDGKLAVSTSAEDNLETKMVDLTSYTVEFSTSISGSKDGSTTSESTVCSVCKEGDSKNRLTRDTADSEITSKSTMDSGLEEQGLDCHKSYAIDINTVINKVEDTFSNEDFNTDEALSEGVKPEDSSKSIMSSEDSNGNDKDELIDEITSKSTLDSVHEKQGFTAEHFQKSDVIDTSAVSTKIEDNFFSEDRTEAERENAKPEDSRKSIVSSENSDVKDNEGSINEITSTSMLDSVHEEQGFTAEHFPKSDGIDTNAVAIKVEDNFSNEGFDQTETERENAKPDDSRKSVVSSENSDGNDNDGSIDENTLKSTLNSVHEEHEFTAEHFLKSDVIDPNAVASKVEDNFSNEGFDQTETERENAKPDDSRKSIVSSENSDGNDIVAVDETTLKSMLNYVHEERGFTAELVQKSDVEINAAASKVEDKFSNEGFDKAEAQREDAKLESSSKSIISCENRNDNDDYGSGYEITSNSMLDSVGEEKRLPAELFQKSDAIDINAVTTEDEDKLSKEGFDRAETQEKDDKPEDSSNSLSSEDSNSNDKEGSIDEERSSPIAHAVKVEHDTDTGNSLKENENPKVLTEDSCMDSLASESNEMRPGKDEGQADTHTISCSTHKEVDNAVVADKPPNGVSLRTRISRGGDNTCHQRADALESLLELCAQLLQQGKLEELAAVLRPFGEDAVSVSSRETAIWLTKSLVASQNLNPEI* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1537 1043 Gene3D Transferase(Phosphotransferase) domain 1 93 279 - -
Gso2g1537 1043 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 887 1029 - -
Gso2g1537 1043 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 586 674 - -
Gso2g1537 1043 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 511 594 - -
Gso2g1537 1043 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 826 884 - -
Gso2g1537 1043 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 750 832 - -
Gso2g1537 1043 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 4 515 - -
Gso2g1537 1043 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 671 750 - -
Gso2g1537 1043 MobiDBLite consensus disorder prediction 522 551 - -
Gso2g1537 1043 Gene3D Phosphorylase Kinase; domain 1 2 92 - -
Gso2g1537 1043 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 4 515 - -
Gso2g1537 1043 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 826 884 - -
Gso2g1537 1043 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 887 1029 - -
Gso2g1537 1043 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 586 674 - -
Gso2g1537 1043 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 671 750 - -
Gso2g1537 1043 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 511 594 - -
Gso2g1537 1043 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 750 832 - -
Gso2g1537 1043 MobiDBLite consensus disorder prediction 608 628 - -
Gso2g1537 1043 SMART serkin_6 10 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1537 1043 CDD STKc_Nek 9 267 - -
Gso2g1537 1043 MobiDBLite consensus disorder prediction 507 521 - -
Gso2g1537 1043 Pfam Protein kinase domain 10 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1537 1043 MobiDBLite consensus disorder prediction 678 720 - -
Gso2g1537 1043 MobiDBLite consensus disorder prediction 766 782 - -
Gso2g1537 1043 MobiDBLite consensus disorder prediction 502 655 - -
Gso2g1537 1043 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Gso2g1537 1043 MobiDBLite consensus disorder prediction 834 866 - -
Gso2g1537 1043 ProSiteProfiles Protein kinase domain profile. 10 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1537 1043 MobiDBLite consensus disorder prediction 824 954 - -
Gso2g1537 1043 MobiDBLite consensus disorder prediction 876 915 - -
Gso2g1537 1043 MobiDBLite consensus disorder prediction 766 804 - -
Gso2g1537 1043 MobiDBLite consensus disorder prediction 629 649 - -
Gso2g1537 1043 SUPERFAMILY Protein kinase-like (PK-like) 7 291 IPR011009 -
Gso2g1537 1043 MobiDBLite consensus disorder prediction 447 479 - -
Gso2g1537 1043 MobiDBLite consensus disorder prediction 783 804 - -
Gso2g1537 1043 MobiDBLite consensus disorder prediction 689 709 - -
Gso2g1537 1043 MobiDBLite consensus disorder prediction 552 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1537 Gso-Chr2 32432435 32441729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1537 10 268 MAP Kinase Kinase Kinase AT3G13530 32.184 6.46e-32 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gso2g1537 Pkinase 1.3e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1537 K08857 - gmx:100796658 1990.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1188 19 40326915 40333161 Gso2g1537 2 32432435 32441729 PCT
Gso3g1191 3 37504668 37510248 Gso2g1537 2 32432435 32441729 PCT
Gso2g1537 2 32432435 32441729 Gso19g1188 19 40326915 40333161 PCT
Gso2g1537 2 32432435 32441729 Gso3g1191 3 37504668 37510248 PCT