Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1533 ATGGAACCATCCATGTGGAGCACCGAAGGCATGTCGACTTACTGGAGCCAAATTTCGGAGACATGTTACCAAGGACATGAAACAACTTCTCGAGGCCCATCAAATGATCATGGAACCCAAAATTGGACACAAAATGAAGTCCTAATTCCAGTGCCAAAACATGTTCAAGGAAGCCAATTTCCATCAAACTTAATAGGATGGGACGAAGTACCTCAACAAAGTATCACAAAAAGTCCCACACAAACTTGGGTGGTTGCCTCCAAGAAAGTTGAGTTCGAAGTTAAAGAACCGATTAAGCAAAAACGATATCGTAAACGGAATTTAAAGAAAATCACCTCTGTGTATCGAGGAGTTACAAAGTCTAAGGGAAAGGGACTTTTCGAATCCTTTGTGTGGGATAAGGACCCGAAAACAACTGGAAAGAAAGGAAAGACAGTTTATATTGGTGGATTTAAAAATGAACTAGAAGCAGCAAGAGCTCACGATTTGATTGCCATAAAGATATGGGGCAAGTTTGCATATACAAATTTTCCAGAGAGTTGTTATTCGAAGGAAATCTTAGAAACACAAAGTATGAGCGTAAGAGAATGTATTCTTGCAATCAGAAGGCGTAGCAAGAATAATTCAACAGCTAAGTTTGATGGATGCAACATCTCAAGTTCTTTTGCTAGAGCTTCAGTTGGAGTGGAGGAAAATAATGCAATTGGTGATGCATTGCCAAACCTGGACACCACAAAGCAGTCCTTGATACAAGAGATTGGCCAAAAATCTCAAACACCAACAACTTTACAAAACCAACATGGGATTATTGATGAGAACCAATTTATGTATGATGATCAATACTTATGGTCAGATCTTGCATTTCAAAATGACCCAAGTTTCCAAATTGATGCTAGTTTTCCTCTATGGTCATATGATTTTGGCAATACACTAGTTGAAGATCGTGCAAGTGCTTTAGGAAATGCCCTCAATTGGAAGATTTCAATGTTTGAGAAGGGTAATGAAAATCCAACAAAAGCAGGAAATGATGGTATTAGTTCATTTGGGTCAAGTTCTATAGGGTTCCATCCAATGGGATCAAATATTCAGCATTTTAAAGCACCAAACCTACAAATTGCACCTGTCCAAAGGTATGAACCTCTCCAATATGGATTTGCAACAAACAGTACTCATTCCTGA 1179 0.3868 MEPSMWSTEGMSTYWSQISETCYQGHETTSRGPSNDHGTQNWTQNEVLIPVPKHVQGSQFPSNLIGWDEVPQQSITKSPTQTWVVASKKVEFEVKEPIKQKRYRKRNLKKITSVYRGVTKSKGKGLFESFVWDKDPKTTGKKGKTVYIGGFKNELEAARAHDLIAIKIWGKFAYTNFPESCYSKEILETQSMSVRECILAIRRRSKNNSTAKFDGCNISSSFARASVGVEENNAIGDALPNLDTTKQSLIQEIGQKSQTPTTLQNQHGIIDENQFMYDDQYLWSDLAFQNDPSFQIDASFPLWSYDFGNTLVEDRASALGNALNWKISMFEKGNENPTKAGNDGISSFGSSSIGFHPMGSNIQHFKAPNLQIAPVQRYEPLQYGFATNSTHS* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1533 392 Gene3D AP2/ERF domain 114 180 IPR036955 GO:0003700|GO:0006355
Gso2g1533 392 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL7 59 277 - -
Gso2g1533 392 Pfam AP2 domain 113 170 IPR001471 GO:0003700|GO:0006355
Gso2g1533 392 CDD AP2 113 180 IPR001471 GO:0003700|GO:0006355
Gso2g1533 392 SUPERFAMILY DNA-binding domain 113 180 IPR016177 GO:0003677
Gso2g1533 392 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 59 277 - -
Gso2g1533 392 SMART rav1_2 114 184 IPR001471 GO:0003700|GO:0006355
Gso2g1533 392 ProSiteProfiles AP2/ERF domain profile. 114 178 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1533 Gso-Chr2 32202958 32208168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1533 108 205 AP2-EREBP Transcription Factor Family AT5G65510 47.000 7.02e-23 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso2g1533 AP2 5.9e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1533 K09285 - gmx:102665149 776.933