Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1520 ATGAACGAGAACAGGATTGATTGTGTAGGACGGACTCAACAAAGCTATGGCCTAAATGGTGATTGGAATTCTGAGTTTGGCAATTGTTCTAGTCAATATTTTGATGTGAGACAGGCTTCAAATATGGGAACTTGCAATCAGCCACTTGCAATGGCCAGTGGTGGAGGAGTGGAACAGGAACCACACATAGGCCAAAACAAATCATCTAGCAGCATCATAAGCCGTTTCAAGTCTCCTGCTTCAGCCTTTTATGCAACAGAAATGTGCATGGGTGGTTTCCCTCAATATGATAGCCAAATTGGCAATCCATCTTTGATGTCTCATTCCTCCAAGTTTAATGATATGGAATTTCCTTTATATCAATCTCTCAGGCAAAGCCTATTCATGCCTTCATTAGCAAACCAACCTCCCCCCAAATTTGACTTGTCAAATCCCTTGCAAGAAATGCTCAAATTTCATTTGAATAGTGATCAATGTGTTAGATCTCTTGAAACATTTAATAAAATCCCATGTGGGGATTTTCCTGGCAGCAATTTTCTTCCAATTGAACAACATAAGTTATTCATTGATGATGCTGCCCCAATTAGTAGAAGCCCTTCAATTCCTTCTAAGGGAAATCAGGGTCAAACAGTTTCTTGTGGCTCATTCAATTTGCCTTCTGCACAGCTTAGTTTTTCTTCTCAGCAAGAGATGCTGTCTCCAACAGGTAGCATGCCAACTAATTCTGGAAACTCTAGTTCAAATGGATCAGTAGTTTCAAGTAAAACAAGAATAAGATGGACTCAGGAGCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTCGGAGGTGCTGAGAAAGCAACACCAAAAGCTATATTAAGGCTGATGGATTCAGATGGATTGACCATCTTCCAAGTTAAAAGTCATTTGCAGAAATATAGAATTGCCAAATTCATGCCACAGCCAACTCAAGGGAAATCTGACAAAAGAACCAATGCAGAGAATGTGCATCTTGATGTCAAAACTGGCTTCCAAATTAGAGAGGCACTTCAGTTGCAGTTAGATGTTCAGCGGCGTCTTCATGAACAGCTAGAGATTCAGAGAAAATTACAGTTGAGGATTGAGGAGCAAGGTAAGCAGCTGAAGATGATGTTTGACCAACAGCAGAAGACAACTGATAGCCACTTGATTACTGAGAATAGTGATAGACCAATTAGTTCTAAAGATGTTCTGGTTTCCATTTATGAAGGGTCTGAAAATTCCTTGTTCTCTTCCAAGATAAATTAG 1269 0.4003 MNENRIDCVGRTQQSYGLNGDWNSEFGNCSSQYFDVRQASNMGTCNQPLAMASGGGVEQEPHIGQNKSSSSIISRFKSPASAFYATEMCMGGFPQYDSQIGNPSLMSHSSKFNDMEFPLYQSLRQSLFMPSLANQPPPKFDLSNPLQEMLKFHLNSDQCVRSLETFNKIPCGDFPGSNFLPIEQHKLFIDDAAPISRSPSIPSKGNQGQTVSCGSFNLPSAQLSFSSQQEMLSPTGSMPTNSGNSSSNGSVVSSKTRIRWTQELHEKFVECVNRLGGAEKATPKAILRLMDSDGLTIFQVKSHLQKYRIAKFMPQPTQGKSDKRTNAENVHLDVKTGFQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTTDSHLITENSDRPISSKDVLVSIYEGSENSLFSSKIN* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1520 422 Coils Coil 341 361 - -
Gso2g1520 422 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 51 420 IPR044848 GO:0003700
Gso2g1520 422 Pfam Myb-like DNA-binding domain 259 308 IPR001005 -
Gso2g1520 422 MobiDBLite consensus disorder prediction 227 254 - -
Gso2g1520 422 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 51 420 - -
Gso2g1520 422 SUPERFAMILY Homeodomain-like 253 309 IPR009057 -
Gso2g1520 422 Pfam MYB-CC type transfactor, LHEQLE motif 339 385 IPR025756 -
Gso2g1520 422 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 255 310 IPR006447 GO:0003677
Gso2g1520 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 254 312 IPR017930 -
Gso2g1520 422 Gene3D - 254 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1520 Gso-Chr2 31582580 31589816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1520 245 404 G2-like Transcription Factor Family AT4G28610 52.907 4.87e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso2g1520 Myb_DNA-binding 2.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1520 - - gmx:100780919 813.527