Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1504 ATGGATTCCCATATCCATCATCATCAAAGTTACCAACAACAGAACCAACCCTCTTCTGGGTTGCTTCGTTTTCGCTCTGCGCCTAGCTCTCTTCTTTCAAATCTCACACCTTCTTTTGTGAGTGAAGACTTTGGTTCTAGCAGCTTCAGAGAGTTGGAAGGAAACAACAACAAGGGTTGTTCTAAGGATTTGAGTTCGATGAATTCGCATAAGGGGGTTTATGGTGGGGGGTTGCCACCTCACTATCCAAGGCATGGTTCTTCTTCTTCTACTTCGAGTTCTGCTATGGAAGGGTCTTATGGGATGGTGAGTTCAATGGGATTGGATCATGAAGCGCCGCATAAGGGGTTTGGGTCAAGTCTTCTCAGGCAGAGTAGCTCCCCTGCTGGCCTTTTCTCCAATAACAACATTTCCTTTCAAAATGGGTTTGCCACCATGAAAGGTGTTGGAAACTATGGTGCGGTGAATGGAAGTAATGGTGAACTTAGTCCATGCATTAACAGATTGAAGAACCAGGTTAGCTTCTCACCAAGAAATGCTTCTTCCCTGGGAATGTTGTCGCAGATCTCTGAATTAGGGAGTGAAGACATTGAGGCAACTAGTCCTGATGATGATACTAAACATGGAGGTAATGATACTCAACATTATGACCCCGGATTCCCCTTTGGTTCTTGGAATGATACTCCACAACTCTCAGAAAATATCAGTGGCTTGAAAAGAGGGAGAAGTGGCAATGAAAAGATGTTTTCTGATGTTCAGAATGGAGAGCTAGCAAACCAAGTTAATATGTTATCACATCACTTGAGTTTACCAAAAACTTCAGCAGAGATGATTACTATGGAGAAGTTGCTTCAGTTCCCTGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGCTGTGCTACTCATCCTCGAAGCATTGCTGAAAGGGTGAGAAGAACTCGGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTCCCACACATGGATAAGCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGACTCTAAGTGAAAAAAGGGCAAACTGCAAGTGTATAAGCATGCCAAAGGCAGATACAAATCAAATTGCTTGA 1137 0.4283 MDSHIHHHQSYQQQNQPSSGLLRFRSAPSSLLSNLTPSFVSEDFGSSSFRELEGNNNKGCSKDLSSMNSHKGVYGGGLPPHYPRHGSSSSTSSSAMEGSYGMVSSMGLDHEAPHKGFGSSLLRQSSSPAGLFSNNNISFQNGFATMKGVGNYGAVNGSNGELSPCINRLKNQVSFSPRNASSLGMLSQISELGSEDIEATSPDDDTKHGGNDTQHYDPGFPFGSWNDTPQLSENISGLKRGRSGNEKMFSDVQNGELANQVNMLSHHLSLPKTSAEMITMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPHMDKQTNTADMLDLAVEYIKDLQKQFKTLSEKRANCKCISMPKADTNQIA* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1504 378 MobiDBLite consensus disorder prediction 197 228 - -
Gso2g1504 378 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 370 - -
Gso2g1504 378 PANTHER TRANSCRIPTION FACTOR BHLH130 13 370 - -
Gso2g1504 378 Pfam Helix-loop-helix DNA-binding domain 305 351 IPR011598 GO:0046983
Gso2g1504 378 SMART finulus 306 356 IPR011598 GO:0046983
Gso2g1504 378 MobiDBLite consensus disorder prediction 1 22 - -
Gso2g1504 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 350 IPR011598 GO:0046983
Gso2g1504 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 303 365 IPR036638 GO:0046983
Gso2g1504 378 MobiDBLite consensus disorder prediction 8 22 - -
Gso2g1504 378 Gene3D - 301 369 IPR036638 GO:0046983
Gso2g1504 378 MobiDBLite consensus disorder prediction 75 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1504 Gso-Chr2 30154493 30158320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1504 1 356 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 45.431 8.68e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g1504 HLH 4.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1504 - - gmx:100819605 741.88