Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1482 ATGGCGTCCAAAGGTCCCAGGTCGAGGATTGATCACGAGAGCAGAGCCAAACGCCAGAAGGCTCTTGAAGCTCCAAGGGAGCCTCGGCGACCCAAAACTCATTGGGACCATGTCTTAGAAGAGATGGTCTGGTTATCAAAGGATTTTGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAAAAAGTAGCTTTAAGAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAGGAGCAGCGGTTAAGAAAGGTTGCACTTAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAACTGGTTCTTTACAAACATCAAATGGAACTCGATGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTATTAGGGCAAACCGAGAGGTACTCAACAATGTTGGCTGAAAATCTTGTAGATCCTTATAAATCAGCAGAGAATAATTCTGCAGAGCACCACATGAGTATTCAATGCAAAGATGTACATGATGTTATTAATGAACCTAAGGAAGCTGATGTTGAGTATCAATCAGATGCAGCTGACAATGATGAAGAATATGATGTACAATATGATGATGAATCGGAGGATGATGAGCGAACAATTGAGCAAGATGAGGCTCTTATAACTAAAGAAGAAAGGCAAGAGGAATTGGCCGCTTTGCGTGATGAAATGGATCTTCCAATTGAGGAGTTACTTAAACGTTATGCTGGGGATAAAGGAGAATCTGTAATGAAAGAAAGTAGTCCAGAGCATAGTGAAGATGGTGGGAAAATAGTTAGAGCTGGTGATGAAAACGGAGATGATCTTTTATCTGTAAGCAAAATTGGCACAAGCAACTCCAGCATAGTCTCTGGTCGACGTTGTGATGAAAGTAATGGTGATGTTGCTACACCAACAAACAATTTATCTCAATGTGAGAATGGTCAATCTGAAAATCTAAAAGAGGTTCCCAGTGAGACAGCGAATGAAGATTTTTCATATGATTTTACTGATGAAGAGGAAGATGGTGACTTTTTGCTTGGCATAGAAGATAAGGATGATGAAACAACCTTATCTGAGGAGGAACAACTGGAAAGAGTTGATGCAATTGATCCCAAGGACGAGATTGCATTGTTACAAAAGGAGAGTGTCATGCCTGTTGAGGAATTGCTTGCAAGATATAAAAGGGACCCAAGTGACGATGAAGATGGGGAATATGAATCTGATTATGCTTCTGCTTTATCAGAGAACAATTCGGATTCTCCAGTCCATGAGGATGCTGGGCAGAAGGATCCTGCCATTCCTATGGATGAAGATATCAAGTCTGGTGAGCACCTGGCTGCCATACAGTCCCAGGAAGAACAGTGGGAATCACCTCATGAAAATTTAGAAAAAAGAGAAAGTGAGGATATAATTGCTGATGCAGCAGCTGCTGCAAGATCAGCACAACCCACTGGAAACACCTTCTCCACAACTAGTGTGCGTACAAAGTTCCCTTTTCTTCTCAAGTACTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACGATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACAATTATGACTATTTCTTTGCTTGCACATCTTGCTTGTGATAAAGGGATTTGGGGCCCACATTTAATTGTTGTACCAACTAGTGTAATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCCTTTAAAATTTTGACTTATTTTGGAAGTGCAAAGGAGCGAAAACTTAAAAGGCAAGGATGGTTAAAACCTAACTCCTTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAACGACGGATTCTCTTGACTGGTACGCCACTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCGCATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGTGAAGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTTCATAATGTACTTCGTCCATTCTTACTTCGTCGACTTAAGCGAGATGTGGAGAAGCAACTTCCAATGAAGCATGAACATGTCATATATTGTAGACTATCAAAGAGGCAGCGGAATCTGTATGAAGATTTCATTGCTAGTTCAGAGACCCAAGCCACACTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAGGTTTGCAATCATCCTGATCTATTTGAGGGTCGTCCTATTGTCAGTTCTTTTGATATGCGTGGTATTGATATTCAGTTAAGTTCTTCTGTTTGCTCCATGCTTTTGCCTAGTCCCTTTTCAACGGTGGACCTAAGAGGTTTGGGTCTTTTATTCACTCATCTTGACTATAGCATGGCTGCTTGGGAAAGTGATGAAGTACAAACTATTGAGACCCCTGTGACTTTAATCATGGAACGTACTGATATGGCCGAACTAGAAGTAATTAGGCCACATAAATGTCAAAAAAAGTTGCAAGGAACAAACATTTTTGAAGAGATCCAATGGGCGATCTGGGAAGAGAGGCTAAAACAGACGAAGGAACATGCAGCAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAAAGACCCATCTACTCGACAACTCTAAGGGATCTTGTTGCCTTAAGACATCCTGTAAATGATATTCATCAGGTGAAAGCAAACCCTGTTTCATACTTGTACTCATCAAAGCTAGCTGACATTGTTCTCTCCCCGGTTGAACGATTTCAGAAGATGACTGATGTGGTTGAAAGCTTCATGTTTGCAATTCCAGCTGCACGGGCACCCTCTCCTGTATGTTGGTGCAGTACAAGTGAGACTAGTGTGTTTCTGCACCCATCTTACAAGCAGAAATGCTCTGAAGTTCTGTTACCGCTGCTGTCACCAATCAGGCCTGCAATTGTCCGCCGGCAAGTGTATTTCCCTGACAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAAGAACTAGCAATTTTGTTGAGGAGATTAAAATCAGAAGGTCACCGAGCTTTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAATTTGTATGGGTATACATACATGCGCTTAGATGGATCAACCCAACCGGAGGAGAGACAGACCTTAATGCAGCGCTTTAACACCAACCCCAAATATTTTCTTTTCATCTTGTCAACTCGTAGTGGGGGTGTTGGTATCAATTTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGGTGCCACAGAATTGGTCAGACACGCGAAGTTCGTATCTATAGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAAAAAGCAAATCAGAAGCGTGCACTTGATAATCTAGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGTCATAGAACACTTTCAATAAAAAATATGCCGAAGGAGAAAAACCAGAACAATGGGGAAGTTTCTGTAACTAATGCAGATGTTGAGGCTGCATTAAAATGTGTAGAAGATGAAGCAGATTATATGGCTTTGAAGAAAGTTGAACTGGAAGAGGCTGTGGACAATCAGGAGTTTACAGAAGAAGTCATTGGGAGATTTGAAGACGATGAATATGTAAATGAGGATGATGAGACTGCAGAATTAGGTGAATCTGTTTTGAATTTAAATAAAGAGAATGCGTTAATGTTAAATGGAAGTGATCATAAGGAAGATAGACCGCCACACTCTGTTGCTGGCAAAGAAGATGATCCTGACATGCTGGCTGAAGTCAAACAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATCTCAGCATTTGAGAATGAGCTACGCCCTATTGATCGATATGCCATTCGTTTTATGGAACTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAGTTGGATCGCATTGAAAAGTACAAGGAGGAGATGGAAGCCGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTATGCAACTACGGCATATCGACAGCATGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTCGAATATGAAGCTAGACAGAAAGAAGCCGAGGAAACTTGTGATTCTAAAAAGACTCAAACACCAGGGGATTCGAAGCCCAAATCTAAAAAGAAACCCAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCTTTAACCTCTGGCTTGAGACCTGTCAAAGAAGAGTCACAAGCAGAGCCTATGAACATAGATGATGAGGATGTCACTGGTGTAGATTTTCTGTCTCCAAATTCAACCAAGCAGAAAAAACGTAAGAAGTCTAAATTAACTACTGATGGTGAAGAAGAAAAGAGACTTAAGAAGTCTAAAAAGTCCAAGAGGGATCCTCCTGACATTTATGCTTCCGATTTAGAATCCAACTCATTAGTTGTGCAGGATGAACATGCAGAATCAAAGACTTGTGAAAGTCTGGTTGATTTAGAACAGAAAACAGCAAGCAGGAGTAAGATAGGAGGAAAAATATCCATCACTCCTATGCCTGTAAAACGGGTCTGGATGATAAAACCGGAAAAATTGAAAAAGGGACATCATTGGTCCAAAGATTGTATTCCACCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCTGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGTGAAACGCTTTATGGCATGAGTGGTGGTGGGTCATACAGGGGAAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTCGGAGAACTATTCCAAAAGTATGTCTTGCTGTCACTGGACAATGCAAATCATGAGAAGATCAACAGTCCAGGCTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATTCGGATGCTGTTAGATGTTGCTTCTGAGCAGGTAAATAGGGAGTTACTGCTGCAGAAGCATTTTTTTGCATTGCTTTCATCTGTCTGGAAGGTGGCATCACATGTTGACCGCAGGCGAAATCCATTACCCACCTGCAATGGTCTCTATTTCGATCAGAGTTTCTATACTTCCATTGGCCAGCCTTCACAAAATTCCTTGAAGAAATCCTCTAAAAGGATGACATTTACAAATTTAGCCCAGAGCAAGAAGTTAGTAGCAGCTGCACTTGATGATATCACAACTAGGCAAGTGAATGACAAAGTCATTCTCTCTAACCAAGGTGAAGACATGCCAGTAAGTGCAGATCAGCTGGATATAACACTGGAGTTCACAAAAGAGGATAGCGACGTCCTATCTTCATTTCCATCTGTTATAAATTTATCAATAATTGGGACTGAACCAACACCATCTTTAAATAAGCAAACAGGAGAAGATGATCTTAAAGTTGGTTTGTTCATTGCTGAGAATCGTTTCAGGGAGGCAGCAAGAGTTTGTGAAGAAGACAGCTCTGGATGGGCATCATCTGCATTCCCAACCAACGATGCAAGGTCTCGAGCTGGATCCAGGATACAATCCTCCGGAAAGCAGAAGTCTTCCATGTCCGACTCTTCTAAGCCTTCTAGGTCAAAGTCCAAAAAAGCTTCAATGGATCCTAGTGAAATGCATCACCATCAGGCTGATTCTAAATTCCAGTCAATGCCATCACTCAAAGATCTGAGAATTGATCTCACTTCATTAACTACTGATGAAGTTGGAATTGATAGTATGGGTAGCATTTTCTCCTTTGACTTGAATGGGGAAAGTTCATTGGAAATGGAGAGTGTTGGAATGATCCCACATGATTATGTTGCTGGTTTAATCTCAGACCTTGATGATTGTACAGCATTCCCTGAATATACTGACATTAGATAA 6123 0.4083 MASKGPRSRIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDPYKSAENNSAEHHMSIQCKDVHDVINEPKEADVEYQSDAADNDEEYDVQYDDESEDDERTIEQDEALITKEERQEELAALRDEMDLPIEELLKRYAGDKGESVMKESSPEHSEDGGKIVRAGDENGDDLLSVSKIGTSNSSIVSGRRCDESNGDVATPTNNLSQCENGQSENLKEVPSETANEDFSYDFTDEEEDGDFLLGIEDKDDETTLSEEEQLERVDAIDPKDEIALLQKESVMPVEELLARYKRDPSDDEDGEYESDYASALSENNSDSPVHEDAGQKDPAIPMDEDIKSGEHLAAIQSQEEQWESPHENLEKRESEDIIADAAAAARSAQPTGNTFSTTSVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMRGIDIQLSSSVCSMLLPSPFSTVDLRGLGLLFTHLDYSMAAWESDEVQTIETPVTLIMERTDMAELEVIRPHKCQKKLQGTNIFEEIQWAIWEERLKQTKEHAAAIAWWNSLRCKKRPIYSTTLRDLVALRHPVNDIHQVKANPVSYLYSSKLADIVLSPVERFQKMTDVVESFMFAIPAARAPSPVCWCSTSETSVFLHPSYKQKCSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVRIYRLISESTIEENILKKANQKRALDNLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKNMPKEKNQNNGEVSVTNADVEAALKCVEDEADYMALKKVELEEAVDNQEFTEEVIGRFEDDEYVNEDDETAELGESVLNLNKENALMLNGSDHKEDRPPHSVAGKEDDPDMLAEVKQMAAAAAAAGQAISAFENELRPIDRYAIRFMELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADYATTAYRQHVEALAQHQLMEELEYEARQKEAEETCDSKKTQTPGDSKPKSKKKPKKAKFKSLKKGSLTSGLRPVKEESQAEPMNIDDEDVTGVDFLSPNSTKQKKRKKSKLTTDGEEEKRLKKSKKSKRDPPDIYASDLESNSLVVQDEHAESKTCESLVDLEQKTASRSKIGGKISITPMPVKRVWMIKPEKLKKGHHWSKDCIPPADFWLPQEDAILCAVVHEYGPNWSLVSETLYGMSGGGSYRGRYRHPVHCCERFGELFQKYVLLSLDNANHEKINSPGSGKALLKVTEDNIRMLLDVASEQVNRELLLQKHFFALLSSVWKVASHVDRRRNPLPTCNGLYFDQSFYTSIGQPSQNSLKKSSKRMTFTNLAQSKKLVAAALDDITTRQVNDKVILSNQGEDMPVSADQLDITLEFTKEDSDVLSSFPSVINLSIIGTEPTPSLNKQTGEDDLKVGLFIAENRFREAARVCEEDSSGWASSAFPTNDARSRAGSRIQSSGKQKSSMSDSSKPSRSKSKKASMDPSEMHHHQADSKFQSMPSLKDLRIDLTSLTTDEVGIDSMGSIFSFDLNGESSLEMESVGMIPHDYVAGLISDLDDCTAFPEYTDIR* 2041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1482 2040 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Gso2g1482 2040 MobiDBLite consensus disorder prediction 1456 1475 - -
Gso2g1482 2040 SMART helicmild6 1080 1163 IPR001650 -
Gso2g1482 2040 MobiDBLite consensus disorder prediction 353 373 - -
Gso2g1482 2040 PANTHER HELICASE SRCAP 3 1958 - -
Gso2g1482 2040 Gene3D - 756 831 - -
Gso2g1482 2040 Gene3D - 479 755 IPR038718 -
Gso2g1482 2040 MobiDBLite consensus disorder prediction 396 441 - -
Gso2g1482 2040 MobiDBLite consensus disorder prediction 1 33 - -
Gso2g1482 2040 MobiDBLite consensus disorder prediction 1909 1942 - -
Gso2g1482 2040 MobiDBLite consensus disorder prediction 248 275 - -
Gso2g1482 2040 CDD DEXQc_SRCAP 510 732 - -
Gso2g1482 2040 CDD SF2_C_SNF 1039 1174 - -
Gso2g1482 2040 MobiDBLite consensus disorder prediction 248 331 - -
Gso2g1482 2040 MobiDBLite consensus disorder prediction 282 327 - -
Gso2g1482 2040 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1054 1204 IPR001650 -
Gso2g1482 2040 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 522 687 IPR014001 -
Gso2g1482 2040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 732 IPR027417 -
Gso2g1482 2040 MobiDBLite consensus disorder prediction 1943 1964 - -
Gso2g1482 2040 Pfam SNF2-related domain 527 799 IPR000330 GO:0005524|GO:0140658
Gso2g1482 2040 SMART bromneu2 23 94 IPR014012 -
Gso2g1482 2040 MobiDBLite consensus disorder prediction 1536 1562 - -
Gso2g1482 2040 Coils Coil 214 234 - -
Gso2g1482 2040 Gene3D - 1634 1694 - -
Gso2g1482 2040 MobiDBLite consensus disorder prediction 183 210 - -
Gso2g1482 2040 MobiDBLite consensus disorder prediction 427 441 - -
Gso2g1482 2040 MobiDBLite consensus disorder prediction 188 210 - -
Gso2g1482 2040 SMART ultradead3 506 699 IPR014001 -
Gso2g1482 2040 Pfam Helicase conserved C-terminal domain 1055 1163 IPR001650 -
Gso2g1482 2040 Coils Coil 1391 1411 - -
Gso2g1482 2040 PANTHER HELICASE SRCAP-RELATED 3 1958 - -
Gso2g1482 2040 Gene3D - 1017 1268 IPR027417 -
Gso2g1482 2040 MobiDBLite consensus disorder prediction 1456 1569 - -
Gso2g1482 2040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 734 1231 IPR027417 -
Gso2g1482 2040 MobiDBLite consensus disorder prediction 1906 1968 - -
Gso2g1482 2040 Pfam HSA domain 27 93 IPR014012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1482 Gso-Chr2 29476390 29493708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1482 530 802 RAD5 or RAD16-like Gene Family AT5G43530 30.124 3.07e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso2g1482 SNF2_N 5.9e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1482 - - gmx:100794898 3918.24