Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1479 ATGGACGTTCGCAAGCGCGGAAGGCCCGACGTCAACCTTAACGGCGCCGTTAAGAAGACCAAGCAAGAATTGGAGTCCTTATCAAGTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGTACTGCTGGCTGCCCATTTGGTGAGGGCTGCCACTTCTTACATTATGTTCCAGGTGGTTACAATGTTGTTGCCCATATGATGAATTTAAAACCCGCGGCTCCTCCACCAAGAACCGTTGCTGCACCACCACCCATCCCGAATGGTTCTGCTCCATCTGCTGTTAAAACCCGCATATGTAACAAATTCAATACTGCCGAAGGATGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAACCTATTGCTCCATCAATTGATGATCATCATCATCATCGTCCTTTGGGACCTCCAGCAGGTGGTCGTATGGCTGGTCGAATTGAGCCTCCTCCCGCTATGGCTGGTAGCTTTGGTGCCATTTCTACCGCCAAGATCAGTGTAGAAGCTTCCCTGGCTGGAGCTATCATTGGGAAGGGTGGTGTGAACTCGAAGCAGATCTGTCGCCAAACAGGAGCCAAACTTTCAATTCGAGAGCACGAATCCGATCCAAATCTTAGAAACATTGAACTCGAGGGAACTTTTGAACAGATTAAGGAAGCAAGTAACATGGTAAAAGATTTACTTTTGACCGTGTCAATGTCTGCCCCACCAAAATCCACCCCAGGTGTTCCTGGTGCCCCTGCCCCCCCTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTGCAAAAGGATCTTGCACCTTTGGAGAGAGATGTCACTTTGCACATGGAGCTGCTGAATTGCGCAAGTCGGGAGTATGA 888 0.4865 MDVRKRGRPDVNLNGAVKKTKQELESLSSGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNVVAHMMNLKPAAPPPRTVAAPPPIPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSIDDHHHHRPLGPPAGGRMAGRIEPPPAMAGSFGAISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIKEASNMVKDLLLTVSMSAPPKSTPGVPGAPAPPGSNFKTKLCENFAKGSCTFGERCHFAHGAAELRKSGV* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1479 295 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 8 294 - -
Gso2g1479 295 SUPERFAMILY CCCH zinc finger 261 291 IPR036855 GO:0046872
Gso2g1479 295 SMART kh_6 167 237 IPR004087 GO:0003676
Gso2g1479 295 Gene3D - 91 128 - -
Gso2g1479 295 Gene3D - 260 293 - -
Gso2g1479 295 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Gso2g1479 295 Pfam RNA-binding, Nab2-type zinc finger 37 57 - -
Gso2g1479 295 SMART c3hfinal6 96 123 IPR000571 GO:0046872
Gso2g1479 295 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Gso2g1479 295 SMART c3hfinal6 32 59 IPR000571 GO:0046872
Gso2g1479 295 Pfam KH domain 171 233 IPR004088 GO:0003723
Gso2g1479 295 SUPERFAMILY CCCH zinc finger 95 127 IPR036855 GO:0046872
Gso2g1479 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 123 IPR000571 GO:0046872
Gso2g1479 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Gso2g1479 295 ProSiteProfiles Zinc finger C3H1-type profile. 96 124 IPR000571 GO:0046872
Gso2g1479 295 CDD KH-I 170 233 - -
Gso2g1479 295 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 238 IPR036612 GO:0003723
Gso2g1479 295 SUPERFAMILY CCCH zinc finger 33 58 IPR036855 GO:0046872
Gso2g1479 295 Gene3D K Homology domain, type 1 166 259 IPR036612 GO:0003723
Gso2g1479 295 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 8 294 - -
Gso2g1479 295 ProSiteProfiles Zinc finger C3H1-type profile. 32 60 IPR000571 GO:0046872
Gso2g1479 295 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1479 Gso-Chr2 29391859 29397095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1479 33 131 C3H Transcription Factor Family AT1G68200 26.263 1.88e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso2g1479 KH_1 3.4e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1479 - - gmx:100817463 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1222 19 40726385 40729752 Gso2g1479 2 29391859 29397095 PCT
Gso3g1222 3 37876191 37879929 Gso2g1479 2 29391859 29397095 PCT
Gso2g1479 2 29391859 29397095 Gso19g1222 19 40726385 40729752 PCT
Gso2g1479 2 29391859 29397095 Gso3g1222 3 37876191 37879929 PCT