Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1472 ATGCATGAGTTGTGGGAAACATCAGATAATGATGCCACTATTCGCAAGCAAGCTGAAAAGACACAGAAGATGGCTGTTGGCAATCATCAAAGAGGAACAACCAAGGAACCCAAAAATACATATGCTTCAACAAATTCCTTGGTGGAAAAGGAATTGAGTGTGGACAAGTTAGAGGTCTCAAGAAGATTGACGGTGTCTGATTTTGCAAATTGTGGCTTTTACACGTATACAGACCAGGTTTGGGTTCTCTATGGTGCTGTTTTGATTATTATGGCACGTTCTCTAGACAAGATAAAGAGCATCAATGGCTCAAAAGAAACTCTTAAACTTAGTGTGAGGATCAGTAATCTATGGTTTATTGGCACGCCTAACAAATCTGAGCAAGCTGAGATGGTGTTTGTGGACTCCTATGGTGATGAGATCCACGTTGTTTGTAAACAAGACCAATTGAAGGAGTGTGTTCTAGAAAACATCCCTTTTAGAAAATACAGGTTTGCTGGATTTGCAGATATTGTGGCTGGCCAGTTTGAACCTGGGCTATTGGTTGATGTTATTGGTGTTGTGGAGGAGGTTGTCTTTCGCCAAGTTTCAGGAAAAGGTAGAAGGGTAGTCTTTAAACTAAAGGACTTGAGTCAGCAATTGCTATCTTGCACTTTGTGGGATGATTATTGCTTGCAGTTTTTAAAGTTCTTAGATGATTATGAAGGTGATGGCCCAATTACAGTTCTATTGACCCATGGTAGAATAAAGGAAGCTCAGGGATCTTGTCTCCCATCGGTCAACAATTCTTTTAAGGCTTCAAAGTTAATTATTAACAAACCGGTGATGGAGATTCAAGAATTCAATGAACGGCTTGCAGAGTTGGGCATTGAGGCTCGGTCAGGTTTTAAATCCCATAGTGAAGGGTGTACACAGCTTTCAGGTTCTATCCAATTATCATCAAAGGAATCATTCTTTGGAAAGGCTGAGGCAAAGACTATTGCTGACATTAACACCATCTCTAAAGAAATTGTTTGTGTAACGGTTGGCACAATTACTAGGATTGTTCTGGACAATGATTCATGGTGTTATACAACTTGCATTCAGTGTCATAAAAAAAGTGATGCAGAGATGGCGCCCTTCACATGTGCATGCGGCAAATACAATAAAGAAGCTATGCTTAGGTATAGGCTTGAGGTGATGATCAACCAGGGAGATGAAAACACAAAATTCCTGCTTTGGGACCGTGAATGCAGTGAATTAATTGGTCAATCAGCTGATGCAGTTAATAAGCTTAAAATTGAAGATGGTGATGTTGATTTGAATGCTTCACCCCAAGCACTTGATAAGCTGTTGGGTTATGAACTTGCTTTCAAGATAAAGGTGCAACCCAAGTTCAGGAATTATGCTATTTTGAAGTGTTCAGCTGACTCAAGCTTAATAAATGTTGTGATGGATATGCTAGTTGATGCTGAGACATCTTCAAAAATGGATATCCCAGTTTCTGATTCCAATCATTCTGTCCAACATGAATCTCAATCCTTGTCTGTGACAGCAGGCCATGATCCACTGCTTGGACTCCCCTTGACACCTACAAAGCGGCATACATTTCAAGATTATGATGATGAAGCAGGGACCTCTCAAATTTTACCTCCACAACTTTCATCCAACAAATTAAAAAAACATGGCGCAATTTAG 1677 0.4001 MHELWETSDNDATIRKQAEKTQKMAVGNHQRGTTKEPKNTYASTNSLVEKELSVDKLEVSRRLTVSDFANCGFYTYTDQVWVLYGAVLIIMARSLDKIKSINGSKETLKLSVRISNLWFIGTPNKSEQAEMVFVDSYGDEIHVVCKQDQLKECVLENIPFRKYRFAGFADIVAGQFEPGLLVDVIGVVEEVVFRQVSGKGRRVVFKLKDLSQQLLSCTLWDDYCLQFLKFLDDYEGDGPITVLLTHGRIKEAQGSCLPSVNNSFKASKLIINKPVMEIQEFNERLAELGIEARSGFKSHSEGCTQLSGSIQLSSKESFFGKAEAKTIADINTISKEIVCVTVGTITRIVLDNDSWCYTTCIQCHKKSDAEMAPFTCACGKYNKEAMLRYRLEVMINQGDENTKFLLWDRECSELIGQSADAVNKLKIEDGDVDLNASPQALDKLLGYELAFKIKVQPKFRNYAILKCSADSSLINVVMDMLVDAETSSKMDIPVSDSNHSVQHESQSLSVTAGHDPLLGLPLTPTKRHTFQDYDDEAGTSQILPPQLSSNKLKKHGAI* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1472 558 MobiDBLite consensus disorder prediction 23 41 - -
Gso2g1472 558 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 146 425 - -
Gso2g1472 558 Gene3D - 308 474 IPR012340 -
Gso2g1472 558 MobiDBLite consensus disorder prediction 492 512 - -
Gso2g1472 558 MobiDBLite consensus disorder prediction 537 558 - -
Gso2g1472 558 MobiDBLite consensus disorder prediction 492 515 - -
Gso2g1472 558 PANTHER REPLICATION FACTOR A 1, RFA1 146 425 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso2g1472 558 Gene3D - 156 293 IPR012340 -
Gso2g1472 558 SUPERFAMILY Nucleic acid-binding proteins 163 285 IPR012340 -
Gso2g1472 558 CDD RPA1_DBD_B_like 183 285 - -
Gso2g1472 558 MobiDBLite consensus disorder prediction 21 41 - -
Gso2g1472 558 Pfam Replication factor-A C terminal domain 345 457 IPR013955 -
Gso2g1472 558 CDD RPA1_DBD_C 325 455 IPR013955 -
Gso2g1472 558 SUPERFAMILY Nucleic acid-binding proteins 323 461 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1472 Gso-Chr2 29210068 29214314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1472 150 431 Core DNA Replication Machinery Family AT4G19130 26.403 1.13e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1472 - - gmx:102667793 1093.95