Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1471 ATGGGGAAGAAGGCGAAGAAAGCTATGAATAATTTGAAAAGGGCTTCCTTTAATAATAAGCCATCTGAGGGTGCTGATTTCTTGCCCTTGGAAGGTGGTCCTGCTCGTAAGCTCGCCGCCTCCCAGCAGAAGCCGCCGGAGAACACCGCCACGGTTTTGTATGTCGGTCGGATTCCGCATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGAGGTTGAGAATCGCAAGGAATAAAAAGTCTGGAAAATCAAGACATTTTGGTTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTGGCTGATACTATGCATAATTATCTCCTTTTTGAACACCTTCTCCAAGTTTATGTAATACCTCCAGAGCATGTTCATCCAAGAATATGGAGAGGATTCAATTACCATTACAAGCCATTGGATTCAGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACATTGAAAGAGCACCAGAAGTTGGTGGATAAGGTTCTGAAACATGACCAAAAACGACGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGCCCTGAGATTGTGGGCAACATCCAACCTGCACCAAAGAAAATAAAGTTTGAAGACTGA 636 0.4261 MGKKAKKAMNNLKRASFNNKPSEGADFLPLEGGPARKLAASQQKPPENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKSGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVYVIPPEHVHPRIWRGFNYHYKPLDSVQIERKRHDKERTLKEHQKLVDKVLKHDQKRRKRIEAAGIDYECPEIVGNIQPAPKKIKFED* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1471 211 Gene3D - 31 126 IPR012677 -
Gso2g1471 211 SMART rrm1_1 52 125 IPR000504 GO:0003723
Gso2g1471 211 CDD RRM_NIFK_like 52 124 - -
Gso2g1471 211 PANTHER - 3 210 - -
Gso2g1471 211 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 3 210 - -
Gso2g1471 211 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 120 IPR000504 GO:0003723
Gso2g1471 211 SUPERFAMILY RNA-binding domain, RBD 35 139 IPR035979 GO:0003676
Gso2g1471 211 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Gso2g1471 211 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1471 Gso-Chr2 29193197 29196316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1471 51 124 Eukaryotic Initiation Factors Gene Family AT1G71770 35.135 1.07e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1471 K14838 - gmx:100814276 436.802