Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1458 ATGGAACTGGCTTTGAGTTTGGGAGACACGTCCAAGTCTTTTACCTTTCTCGACAAGGCCGCGGTGAATTTACCCACCAACAAGGACCCACCTGGGTTGTTCAGCTTGGCGCCGAGTTTCGCCGCCACCGCCGCCGCCGCCGATAAAAGAAGCGATGCTGCTGAGAGGAGGGGTTTTTCTTCAGATCCACCGGTTCAGCTCGACCTTCTTCCTTTCTCTCCGGTTCTCAGACCCCAACAACAACCTCCCTCTCAACTTCGGATCCCTTGGCTCACCGAAGCATGCGGGGCAGCGAGGGTGCTAGACGTGAACCTATTCCGGGCGGCGACCGCGGAGGATGGCGACGACGGCACGTCGTTGTCGTCGTCGCCAAACAGCGCGGTGTCGCCGTTTCAGATGGATTTCTGCACCAGGAACTGTAATGCAGAGTTCGGAGGCAGAAACAAGAGAGAGCAGCAAGAGGCTGAGGGTAGAGCGAGTGATGACGATGAAAATGGCTCCACGAGGAAGAAACTCAGGCTCTCTAAGGAACAATCAGCTTTTCTTGAAGAAAGTTTCAAAGAACACACCACTCTCAATCCCAAGCAAAAACTTGCTTTGGCAAAACAGTTAAATCTTCGTCCTCGTCAAGTGGAGGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGCTGTGAGACCCTAACGGAAGAGAATAGAAGGTTGCAGAAGGAGCTTCAAGAACTCAGAGCCCTAAAAACTTCACAACCTTTCTACATGCAACTTCCAGCCACCACACTCACCATGTGTCCCTCTTGTGAAAGGGTTGCCACAAATTCCACCACAACTAACCAAACTACCACCGTTAACAACAATGCTTCTCAAATCCCAGTGGAATTGTCTCTCAGCAAGCCCAGAATATTGCCCTTCCCCAATGGACAGGCCCAAGCTCATCAAATAGCTTCTTCATGA 990 0.5081 MELALSLGDTSKSFTFLDKAAVNLPTNKDPPGLFSLAPSFAATAAAADKRSDAAERRGFSSDPPVQLDLLPFSPVLRPQQQPPSQLRIPWLTEACGAARVLDVNLFRAATAEDGDDGTSLSSSPNSAVSPFQMDFCTRNCNAEFGGRNKREQQEAEGRASDDDENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSTTTNQTTTVNNNASQIPVELSLSKPRILPFPNGQAQAHQIASS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1458 329 SMART halz 225 268 IPR003106 GO:0006355|GO:0043565
Gso2g1458 329 Gene3D - 173 223 - -
Gso2g1458 329 MobiDBLite consensus disorder prediction 146 173 - -
Gso2g1458 329 PANTHER - 2 301 - -
Gso2g1458 329 Coils Coil 231 261 - -
Gso2g1458 329 CDD homeodomain 169 226 IPR001356 GO:0003677
Gso2g1458 329 SUPERFAMILY Homeodomain-like 166 234 IPR009057 -
Gso2g1458 329 Pfam Homeodomain 169 223 IPR001356 GO:0003677
Gso2g1458 329 Pfam Homeobox associated leucine zipper 225 259 IPR003106 GO:0006355|GO:0043565
Gso2g1458 329 ProSiteProfiles 'Homeobox' domain profile. 165 225 IPR001356 GO:0003677
Gso2g1458 329 SMART HOX_1 167 229 IPR001356 GO:0003677
Gso2g1458 329 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 301 - -
Gso2g1458 329 ProSitePatterns 'Homeobox' domain signature. 200 223 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1458 Gso-Chr2 28505571 28508183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1458 146 318 Homeobox Transcription Factor Family AT4G37790 61.140 2.75e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso2g1458 Homeodomain 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1458 K09338 - gmx:100779138 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1238 19 40865235 40867155 Gso2g1458 2 28505571 28508183 PCT
Gso3g1235 3 38000659 38002675 Gso2g1458 2 28505571 28508183 PCT
Gso2g1458 2 28505571 28508183 Gso19g1238 19 40865235 40867155 PCT
Gso2g1458 2 28505571 28508183 Gso3g1235 3 38000659 38002675 PCT