Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1452 ATGTGGCACGTGTGTTGTATGGTTTACTCAATGAGGGGCTGGGATTGGTTGCGGAGAGGCTCACGAAGATGGGTCTGGTGGAAGGAAGAGTTATGGTGGGGCACTATTATTTTGACAGCTGGGATAACCCTTGCATTATTTGGTGGTGTACGAAAGCATCCTATGGATCAGAATAATGTTCCTGTCAGGGGAGATATTCATGTCATAATTGTTGGTAATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCAGCAGCTGCTGTCTCTCCACGTGGTATCTTTGTCTTTGGTAATGCCACAACCAAAGATGGCCTCACAGTAGCTGTAGTGAAGGATTCCATGACAAGTGACTATGCTTTTGAGGCCGGTGCTATGGTGCTGGCTGACAGTGGATTGTGTTGTATTGATGAGTTAGATAAAATGTCAATAGAGCATCAGGATTTGCTTAAGGCGATGGAGCAACAGCGTGTTTCTATTGCAAAGGCAGGATTAGTAGCAAGTTTATCATCCAGGACTTTTGTCTTAGCAGCTGCAAACCCCGCTTGTGGTCACTATAAGTAA 561 0.4545 MWHVCCMVYSMRGWDWLRRGSRRWVWWKEELWWGTIILTAGITLALFGGVRKHPMDQNNVPVRGDIHVIIVGNPGLGKSQLLQAAAAVSPRGIFVFGNATTKDGLTVAVVKDSMTSDYAFEAGAMVLADSGLCCIDELDKMSIEHQDLLKAMEQQRVSIAKAGLVASLSSRTFVLAAANPACGHYK* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1452 186 SMART mcm 5 186 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gso2g1452 186 Pfam MCM P-loop domain 39 186 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso2g1452 186 Gene3D - 31 186 IPR027417 -
Gso2g1452 186 PANTHER DNA HELICASE MCM8 34 185 - -
Gso2g1452 186 PRINTS Mini-chromosome maintenance (MCM) protein family signature 63 78 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso2g1452 186 PRINTS Mini-chromosome maintenance (MCM) protein family signature 123 137 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso2g1452 186 PRINTS Mini-chromosome maintenance (MCM) protein family signature 150 163 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso2g1452 186 PRINTS Mini-chromosome maintenance (MCM) protein family signature 174 186 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso2g1452 186 ProSiteProfiles MCM family domain profile. 33 186 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso2g1452 186 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 34 185 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gso2g1452 186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 180 IPR027417 -
Gso2g1452 186 Coils Coil 135 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1452 Gso-Chr2 28236754 28241663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1452 33 185 Core DNA Replication Machinery Family AT3G09660 81.046 1.01e-81 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1452 K10737 - gsj:114392005 385.956