Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso2g1441 | ATGAGAACTTCGTGGGCGGATTCTGCTGACAACTCTGCCATTGGTTCTGGCATCACCAATGCCTCGGCTTGCCCTTCCCGGGGAGCTTATGTACCGCCACATCTTCGGAACCGGGCATTGTCGTCAGAGGTTCCTCTGGCGGCAGCGTCACACCCGGCGGTGGCTCTGGGGAATGACCGGGTTAATCATAGTGGTCCAGCTCCTCATCAGGGTGGTGGTTACTTTAAACCTGATCACGGGCGGCAGCAGCAGCAAGGATATGGTTCTGGTTTTCAGAGTGGTGGTGGCGGTGGCTGGAATGGTAGAGGGGTGGGGAGGGACCGTGGGAGGCGTGAGGCGAACCCTTTTGAGAATGTTGAAGCTGAGGATCAATCTTTTAGTGAGCAAGAGAATACGGGGATTAACTTTGAGGCATATGATGATATCCCTGTGGAGACTAGCGGGGAGAATGTGCCACTGCCCGTGAATTCATTCGCGGAAATAGATTTGGGTGTGGCATTGAATCAGAATATACAGAGATGCAAGTATGTGAAACCAACCCCGGTTCAGAGGTATGCCATTCCGATTTCTCTTGCGGGGCGAGACTTGATGGCCTGTGCTCAGACTGGGTCAGGAAAGACAGCTGCCTTTTGCTTCCCTATTATAAGTGGAATCATGAGGGAGCAATATGCTCAAAGGCCGCGTGTGGCTCGAACTGCTTATCCGCTGGCACTTATCCTCTCCCCTACAAGGGAGCTTTCATGTCAGATACATGATGAGGCCAAAAAGTTTTCTTATCAAACTGGTGTCAAAGTGGTGGTTGCTTATGGAGGAGCACCAATCACCCAACAGTTACGGGAGCTTGAGAGAGGCGTTGATATTCTGGTGGCAACTCCAGGACGATTGGTGGATTTGCTTGAGAGGGCTAGGTTGTCATTGCAGATGATAAGATACTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACGCTGTTGTTTAGTGCCACATTTCCCAAAGAGATACAGGCTCTTGCATCAGATTTTCTTTCACGTTATGTGTTTCTGGCTGTTGGAAGGGTCGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAATATGTGCTCGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGGGAAACTGGAGTTAATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACGAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGATTTCCTGCAGCTAGCATTCATGGTGACAGAACACAACAAGAAAGAGAACTAGCATTGAGGTCATTCAAGACTGGAAACACACCAATTCTAGTGGCAACAGATGTTGCTGCACGTGGTCTTGACATCCCACGGGTAGCACATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACGGGGCGAGCTGGTAAAATGGGATTAGCAACGGCCTTCTTCAACGAAGGTAATTTCAACATGGCTAAACCATTAGCTGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCCTGGCTCAGCCGTTATGCGGCAAGGGCTACTTACAGTGGTGGCAACAGAAATAGGAAGTCGGGGGGATCCCGTTTTGGTGGCCGAGATTTTAGGAAAGAGGGCTCGTTTAATAAAGCAACAGATTACTATGGTGGCGGAACTGGTGGTGGATATTGTGGCAATTATGGTGGAGGGTATGGTCAAGGTGTGCCTAGTGCTTGGGATTAG | 1836 | 0.4875 | MRTSWADSADNSAIGSGITNASACPSRGAYVPPHLRNRALSSEVPLAAASHPAVALGNDRVNHSGPAPHQGGGYFKPDHGRQQQQGYGSGFQSGGGGGWNGRGVGRDRGRREANPFENVEAEDQSFSEQENTGINFEAYDDIPVETSGENVPLPVNSFAEIDLGVALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMREQYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARLSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQALASDFLSRYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRETGVNGKQGLTLVFVETKKGADALEHCLCVNGFPAASIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNEGNFNMAKPLADLMQEANQEVPAWLSRYAARATYSGGNRNRKSGGSRFGGRDFRKEGSFNKATDYYGGGTGGGYCGNYGGGYGQGVPSAWD* | 612 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso2g1441 | 611 | CDD | DEADc_DDX3_DDX4 | 157 | 377 | IPR044763 | GO:0003724|GO:0005524 | |
Gso2g1441 | 611 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 42 | 583 | - | - | |
Gso2g1441 | 611 | MobiDBLite | consensus disorder prediction | 57 | 128 | - | - | |
Gso2g1441 | 611 | Pfam | Helicase conserved C-terminal domain | 395 | 510 | IPR001650 | - | |
Gso2g1441 | 611 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED | 42 | 583 | - | - | |
Gso2g1441 | 611 | MobiDBLite | consensus disorder prediction | 104 | 118 | - | - | |
Gso2g1441 | 611 | Gene3D | - | 112 | 373 | IPR027417 | - | |
Gso2g1441 | 611 | CDD | SF2_C_DEAD | 383 | 519 | - | - | |
Gso2g1441 | 611 | SMART | helicmild6 | 429 | 510 | IPR001650 | - | |
Gso2g1441 | 611 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Gso2g1441 | 611 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 156 | 184 | IPR014014 | GO:0003724 | |
Gso2g1441 | 611 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 398 | 549 | IPR001650 | - | |
Gso2g1441 | 611 | SMART | ultradead3 | 175 | 386 | IPR014001 | - | |
Gso2g1441 | 611 | Gene3D | - | 374 | 554 | IPR027417 | - | |
Gso2g1441 | 611 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 236 | 527 | IPR027417 | - | |
Gso2g1441 | 611 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 187 | 371 | IPR014001 | - | |
Gso2g1441 | 611 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Gso2g1441 | 611 | Pfam | DEAD/DEAH box helicase | 180 | 359 | IPR011545 | GO:0003676|GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso2g1441 | Gso-Chr2 | 27741327 | 27755629 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso2g1441 | 154 | 542 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 30.848 | 1.36e-59 | 202 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso2g1441 | K11594 | - | gmx:100800039 | 1114.75 |